Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   G3580_RS13240 Genome accession   NZ_CP048836
Coordinates   2844387..2845622 (+) Length   411 a.a.
NCBI ID   WP_173766229.1    Uniprot ID   A0A6C1B856
Organism   Nitrogeniibacter mangrovi strain M9-3-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2839387..2850622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3580_RS13225 (G3580_13230) - 2840379..2841206 (+) 828 WP_173766226.1 inner membrane protein YpjD -
  G3580_RS13230 (G3580_13235) - 2841281..2842549 (+) 1269 WP_228720662.1 HlyC/CorC family transporter -
  G3580_RS13235 (G3580_13240) pilB 2842650..2844368 (+) 1719 WP_173766227.1 type IV-A pilus assembly ATPase PilB Machinery gene
  G3580_RS13240 (G3580_13245) pilC 2844387..2845622 (+) 1236 WP_173766229.1 type II secretion system F family protein Machinery gene
  G3580_RS13245 (G3580_13250) pilD 2845660..2846502 (+) 843 WP_228720663.1 A24 family peptidase Machinery gene
  G3580_RS13250 (G3580_13255) - 2846603..2846866 (+) 264 WP_173766231.1 FmdB family zinc ribbon protein -
  G3580_RS13255 (G3580_13260) - 2846874..2847506 (+) 633 WP_173766233.1 DUF502 domain-containing protein -
  G3580_RS13260 (G3580_13265) aspS 2847557..2849353 (+) 1797 WP_173766235.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 44470.37 Da        Isoelectric Point: 10.2681

>NTDB_id=423449 G3580_RS13240 WP_173766229.1 2844387..2845622(+) (pilC) [Nitrogeniibacter mangrovi strain M9-3-2]
MATATRTARRPATTVKEALYDWEGKDKKGKIIRGEMRAGGEAVVQATLRRQGVMVTKVKKRKLARGRRITDKDIALFTRQ
MATMMKSGVPLLQAFDIGIKGAGNPSLGRLLNDIRSDVETGASLSQAFRKHPVHFDALFCNLVAAGEQAGILDNLLDRLA
SYKEKILAIKSKIKSALFYPTAVVVVAGIVVTVMMLFVIPQFKEVFTSFGADLPAPTLLVIAMSDYFVANWYIVFGGLAA
IIVTLSMAYKRSEKAQNSLDRLILQVPVIGDVIRKATIARWTRTLSTMFAAGVPLVEALDSVGGASGNHVYKTATKQIQS
DVSTGTSLTVAMQGAKVFPTMVIQMVSIGEESGQLDSMLSKVADFFEQEVDDAVAGLSQLLEPMIMVFLGTVIGGLVVAM
YLPIFKLGQVV

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=423449 G3580_RS13240 WP_173766229.1 2844387..2845622(+) (pilC) [Nitrogeniibacter mangrovi strain M9-3-2]
ATGGCTACCGCGACCCGCACCGCTCGCCGCCCCGCAACCACTGTCAAGGAAGCGCTCTACGACTGGGAGGGCAAGGACAA
GAAAGGCAAGATCATCCGCGGCGAGATGCGCGCCGGGGGCGAAGCCGTGGTCCAGGCCACCCTGCGCCGCCAGGGCGTGA
TGGTGACCAAGGTCAAGAAACGCAAGCTCGCCCGCGGCCGGCGCATCACTGACAAGGACATCGCCCTGTTCACCCGCCAG
ATGGCCACCATGATGAAATCCGGTGTCCCACTGCTCCAGGCCTTCGACATCGGCATCAAGGGCGCGGGCAACCCCTCGCT
CGGCCGACTGCTCAACGACATTCGCAGCGACGTGGAAACCGGCGCCAGCCTGTCCCAGGCCTTCCGCAAGCACCCGGTCC
ATTTCGATGCGCTGTTCTGCAACCTGGTCGCGGCGGGCGAGCAGGCCGGGATTCTGGACAACCTCCTTGATCGGCTAGCG
AGCTACAAAGAAAAGATCCTCGCCATCAAGAGCAAGATCAAGTCGGCGCTGTTCTATCCAACCGCCGTGGTCGTGGTGGC
CGGCATCGTCGTGACCGTGATGATGCTGTTCGTCATTCCGCAGTTCAAGGAGGTGTTTACCAGTTTTGGTGCAGATCTTC
CTGCGCCCACACTACTCGTGATTGCCATGTCGGACTACTTCGTCGCCAACTGGTATATCGTCTTCGGTGGCCTCGCAGCC
ATTATTGTAACCCTGTCAATGGCGTACAAACGCAGCGAGAAGGCACAGAACAGCCTGGATCGATTGATCCTGCAGGTCCC
GGTCATCGGAGATGTGATCCGCAAGGCCACCATCGCCCGATGGACGCGCACCTTGTCGACCATGTTCGCCGCCGGCGTCC
CCCTGGTCGAAGCCCTGGATTCGGTGGGCGGCGCCTCGGGCAACCATGTCTACAAGACGGCCACCAAGCAGATCCAGTCC
GACGTCAGCACTGGCACGAGCCTTACCGTCGCCATGCAGGGGGCCAAGGTTTTCCCCACCATGGTGATCCAGATGGTGTC
CATCGGCGAGGAGTCGGGCCAGCTCGACAGCATGCTCAGCAAGGTGGCGGATTTCTTCGAGCAGGAGGTCGACGATGCGG
TCGCCGGGCTTTCCCAGCTGCTCGAACCCATGATCATGGTTTTCCTCGGCACCGTCATCGGCGGTCTGGTGGTCGCCATG
TATCTGCCGATCTTCAAACTCGGCCAGGTCGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(77-200)

Type II secretion system (T2SS), protein F (T2SSF)

(281-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6C1B856

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53

97.324

0.516
  pilC Legionella pneumophila strain ERS1305867

52.273

96.35

0.504
  pilG Neisseria gonorrhoeae MS11

49.622

96.594

0.479
  pilC Acinetobacter baylyi ADP1

49.246

96.837

0.477
  pilG Neisseria meningitidis 44/76-A

49.37

96.594

0.477
  pilC Acinetobacter baumannii D1279779

49.37

96.594

0.477
  pilC Vibrio cholerae strain A1552

43.182

96.35

0.416
  pilC Vibrio campbellii strain DS40M4

41.058

96.594

0.397
  pilC Thermus thermophilus HB27

37.108

100

0.375