Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   IE382_RS04385 Genome accession   NZ_CP061870
Coordinates   841045..841323 (-) Length   92 a.a.
NCBI ID   WP_026113660.1    Uniprot ID   -
Organism   Bacillus subtilis strain FX-1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 836045..846323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IE382_RS04365 (IE382_04330) cesA 837324..838226 (-) 903 WP_003234180.1 carboxylesterase -
  IE382_RS04370 (IE382_04335) ydfK 838429..839118 (-) 690 WP_015252719.1 DUF554 domain-containing protein -
  IE382_RS04375 (IE382_04340) ydfL 839208..840020 (-) 813 WP_041336934.1 MerR family transcriptional regulator -
  IE382_RS04380 - 840583..840906 (-) 324 WP_017695977.1 hypothetical protein -
  IE382_RS04385 rapF 841045..841323 (-) 279 WP_026113660.1 hypothetical protein Regulator
  IE382_RS04390 (IE382_04350) - 841765..842490 (+) 726 WP_017695978.1 hypothetical protein -
  IE382_RS04395 (IE382_04355) - 842756..843997 (-) 1242 Protein_819 IS1182 family transposase -
  IE382_RS04400 (IE382_04360) mneP 844124..845017 (-) 894 WP_017695981.1 manganese transporter MneP -
  IE382_RS04405 (IE382_04365) ydfN 845493..846113 (+) 621 WP_017695982.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 11264.99 Da        Isoelectric Point: 4.8550

>NTDB_id=423448 IE382_RS04385 WP_026113660.1 841045..841323(-) (rapF) [Bacillus subtilis strain FX-1]
MRDEVKEEIELMKENQDAVVYYQLLKFRHELMLDYLHPDNVRDIEKQYEKLRELKNNNQNLTGMLEYYFYFFMGCTISGS
MNWLLIKLLQTS

Nucleotide


Download         Length: 279 bp        

>NTDB_id=423448 IE382_RS04385 WP_026113660.1 841045..841323(-) (rapF) [Bacillus subtilis strain FX-1]
ATGAGGGATGAAGTTAAGGAAGAAATCGAGCTAATGAAGGAAAACCAAGACGCCGTCGTTTACTACCAACTATTAAAATT
CCGTCATGAATTAATGTTGGACTATCTCCATCCTGACAATGTCAGAGATATAGAGAAACAGTATGAAAAGCTAAGAGAAC
TGAAAAATAACAATCAGAACCTCACAGGAATGTTAGAATACTATTTTTATTTTTTTATGGGATGTACTATTTCAGGCAGC
ATGAACTGGCTTCTAATTAAACTGTTACAGACAAGCTGA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(1-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

46.753

83.696

0.391