Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   G3580_RS13245 Genome accession   NZ_CP048836
Coordinates   2845660..2846502 (+) Length   280 a.a.
NCBI ID   WP_228720663.1    Uniprot ID   -
Organism   Nitrogeniibacter mangrovi strain M9-3-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2840660..2851502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3580_RS13230 (G3580_13235) - 2841281..2842549 (+) 1269 WP_228720662.1 HlyC/CorC family transporter -
  G3580_RS13235 (G3580_13240) pilB 2842650..2844368 (+) 1719 WP_173766227.1 type IV-A pilus assembly ATPase PilB Machinery gene
  G3580_RS13240 (G3580_13245) pilC 2844387..2845622 (+) 1236 WP_173766229.1 type II secretion system F family protein Machinery gene
  G3580_RS13245 (G3580_13250) pilD 2845660..2846502 (+) 843 WP_228720663.1 A24 family peptidase Machinery gene
  G3580_RS13250 (G3580_13255) - 2846603..2846866 (+) 264 WP_173766231.1 FmdB family zinc ribbon protein -
  G3580_RS13255 (G3580_13260) - 2846874..2847506 (+) 633 WP_173766233.1 DUF502 domain-containing protein -
  G3580_RS13260 (G3580_13265) aspS 2847557..2849353 (+) 1797 WP_173766235.1 aspartate--tRNA ligase -
  G3580_RS13265 (G3580_13270) - 2849455..2851080 (+) 1626 WP_173766237.1 response regulator -

Sequence

Protein


Download         Length: 280 a.a.        Molecular weight: 30280.87 Da        Isoelectric Point: 6.8140

>NTDB_id=423450 G3580_RS13245 WP_228720663.1 2845660..2846502(+) (pilD) [Nitrogeniibacter mangrovi strain M9-3-2]
MLENSLALIAGCTLLGLFVGSFLNVVIHRLPLMMEREWAAQAAEFRGEAVDAVDRFNLAVPRSRCPHCGTAIAAFDNIPV
VSFLLLRGKCRHCAAPIGRRYPLIEALCATLSGAAAWHFADPLAIAGALCLIWALLALTFIDLDTQLLPDSITLPLVWLG
LIFNLNTTFATLPDAVIGAIAGYLSLWLVFHAFRLLTGKEGMGYGDFKLLAAIGAWLGWQMLPLTILLSSVVGAVVGIGL
IVFSRHDRNQPIPFGPYLAAAGLIALFFGQTLTEQYLQHL

Nucleotide


Download         Length: 843 bp        

>NTDB_id=423450 G3580_RS13245 WP_228720663.1 2845660..2846502(+) (pilD) [Nitrogeniibacter mangrovi strain M9-3-2]
TTGCTGGAAAACTCCCTCGCTCTCATCGCCGGGTGCACACTGCTCGGCCTGTTCGTCGGCAGCTTCCTGAACGTCGTTAT
TCATCGCCTGCCCCTCATGATGGAGCGCGAGTGGGCGGCTCAGGCGGCCGAATTCCGTGGCGAAGCGGTCGACGCGGTCG
ACCGCTTCAATCTGGCGGTGCCGCGTTCGCGCTGCCCGCATTGCGGCACCGCGATCGCCGCCTTCGACAACATCCCGGTG
GTGAGCTTCCTGCTGCTGCGCGGCAAATGCCGGCATTGCGCGGCGCCGATCGGCCGGCGCTACCCTCTGATCGAGGCGCT
GTGCGCGACGCTCTCTGGCGCGGCCGCCTGGCATTTCGCCGACCCCCTGGCCATTGCGGGCGCCCTGTGCCTCATCTGGG
CGCTGCTGGCGCTGACCTTCATCGACCTCGACACCCAGCTGCTGCCGGACAGCATCACCCTGCCACTGGTCTGGCTGGGC
CTGATCTTCAACCTGAACACGACCTTCGCCACCCTGCCGGATGCCGTCATCGGCGCCATCGCCGGCTACCTGAGCCTGTG
GCTCGTCTTCCACGCCTTCCGCCTGCTGACCGGCAAGGAAGGCATGGGTTACGGTGACTTCAAGCTCCTGGCGGCGATCG
GCGCCTGGCTAGGCTGGCAGATGCTGCCCCTGACCATCCTGCTCTCTTCCGTCGTCGGCGCGGTGGTCGGCATCGGCCTG
ATCGTGTTCTCGCGGCACGACCGGAACCAACCGATTCCGTTCGGCCCTTATCTGGCCGCAGCGGGGCTCATTGCGCTGTT
TTTCGGACAGACGCTCACCGAGCAGTACCTGCAGCACCTTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(130-238)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(14-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

54.104

95.714

0.518
  pilD Vibrio campbellii strain DS40M4

52.768

96.786

0.511
  pilD Neisseria gonorrhoeae MS11

52.569

90.357

0.475
  pilD Acinetobacter baumannii D1279779

47.122

99.286

0.468
  pilD Acinetobacter nosocomialis M2

46.403

99.286

0.461