Detailed information NTG0423450

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: IE382_RS05110
• Genome accession: NZ_CP061870
• Coordinates: 991980..993107 (-)
• Length: 375 a.a.
• NCBI ID: WP_144459072.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain FX-1
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 986980..998107

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IE382_RS05095 (IE382_05055)	dagK	989206..990117 (+)	912	WP_003233894.1	diacylglycerol kinase	-
IE382_RS05100 (IE382_05060)	rlmD	990174..991559 (+)	1386	WP_017695623.1	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	-
IE382_RS05105 (IE382_05065)	-	991793..991990 (-)	198	WP_017695622.1	hypothetical protein	-
IE382_RS05110 (IE382_05070)	rapC	991980..993107 (-)	1128	WP_144459072.1	Rap family tetratricopeptide repeat protein	Regulator
IE382_RS05115 (IE382_05075)	-	993336..993602 (-)	267	WP_052470591.1	hypothetical protein	-
IE382_RS05120 (IE382_05080)	yezA	993669..993875 (-)	207	WP_041056936.1	bacteriocin immunity protein	-
IE382_RS05125 (IE382_05085)	yezG	994116..994571 (-)	456	WP_072557181.1	TIGR01741 family protein	-
IE382_RS05130 (IE382_05090)	yeeF	994591..996600 (-)	2010	WP_041056939.1	LXG family T7SS effector deoxyribonuclease toxin YeeF	-
IE382_RS05135 (IE382_05095)	-	996812..997833 (+)	1022	Protein_960	hypothetical protein	-

Sequence

Protein

• Length: 375 a.a.
• Molecular weight: 44299.94 Da
• Isoelectric Point: 6.6866

>NTDB_id=423450 IE382_RS05110 WP_144459072.1 991980..993107(-) (rapC) [Bacillus subtilis strain FX-1]
MGTISSPHVGMKINEWNRHIQKFNVTDAEMLKAEIERDIDVMEEDQDLLIYYQLIGFRHQLMIDYVIPSEGNQMELSEYL
KRIEGSNRKMEKLVEYYYYFFQGMYEFKEGNFLSAITFYQKAENTIPYISDEIERAEFYFKMAEVFYHMKQTHVSMHYSS
QAYNIYKTHDLYSVRRIQCHFVIAGNYDDLESHEKALPHLEQALKGARLLESKNKRIYGQALFNIGNCYLKMGELTKAAK
YMEQSILQFKKSNFNNLTQAYHDLALIYFLQHKQDQAMDCFRKGVRFACKFDDGLFKIMFEGLQALFVKKGEASILLNVF
NKLETSQGYPYMEELALLAAKFYTEIGQMDDSVICFKKMVHARKQIQRGDCLYEI

Nucleotide

• Length: 1128 bp

>NTDB_id=423450 IE382_RS05110 WP_144459072.1 991980..993107(-) (rapC) [Bacillus subtilis strain FX-1]
TTGGGCACGATTTCGTCTCCGCACGTTGGGATGAAAATTAATGAGTGGAACCGGCATATTCAAAAGTTTAATGTGACTGA
CGCTGAAATGCTTAAAGCTGAGATCGAGCGGGACATTGACGTCATGGAAGAAGACCAAGACCTCTTGATTTACTATCAGC
TCATTGGATTTCGCCATCAGCTTATGATTGACTATGTGATTCCATCTGAAGGAAACCAAATGGAGTTATCAGAATATTTA
AAGAGAATTGAAGGCAGCAACAGGAAGATGGAGAAGCTCGTTGAATACTACTATTACTTTTTTCAAGGAATGTATGAATT
CAAAGAGGGCAATTTCTTAAGTGCCATTACATTCTATCAAAAAGCGGAAAATACAATTCCTTATATTTCAGATGAAATCG
AGCGGGCAGAATTTTATTTTAAAATGGCTGAAGTGTTTTATCATATGAAACAAACCCATGTATCCATGCACTATTCTTCT
CAGGCGTATAACATTTATAAAACGCACGACCTTTACTCAGTCCGCCGCATACAATGCCATTTTGTGATCGCAGGAAACTA
CGATGACCTAGAAAGTCATGAAAAGGCGCTCCCTCACCTCGAACAGGCACTAAAAGGCGCACGGCTGCTTGAAAGCAAAA
ACAAGCGAATTTACGGCCAAGCTTTATTCAATATCGGAAATTGTTATCTTAAAATGGGCGAATTGACGAAAGCAGCAAAA
TACATGGAGCAATCGATACTCCAATTCAAAAAATCAAATTTCAACAACTTGACACAAGCTTACCACGATTTAGCCTTAAT
TTATTTTCTTCAACATAAACAAGACCAAGCAATGGATTGTTTCAGAAAAGGCGTACGCTTCGCATGTAAATTCGACGATG
GCCTATTTAAAATTATGTTTGAAGGATTACAGGCGCTGTTTGTCAAAAAAGGAGAAGCGTCCATTTTATTAAATGTTTTC
AACAAATTAGAGACATCCCAAGGATATCCTTATATGGAAGAGTTGGCATTATTAGCCGCAAAGTTTTATACTGAAATTGG
GCAGATGGATGATTCTGTTATCTGTTTCAAAAAGATGGTTCATGCCCGCAAACAAATTCAGAGAGGGGATTGTTTGTATG
AAATTTAA

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (3-64)

• Tetratricopeptide repeat (TPR_12) (221-287)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	41.689	100	0.421
rapF	Bacillus subtilis subsp. subtilis str. 168	39.05	100	0.395