Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   G4G71_RS27615 Genome accession   NZ_CP048833
Coordinates   6052309..6053526 (+) Length   405 a.a.
NCBI ID   WP_205896252.1    Uniprot ID   A0A7Z3BR36
Organism   Pseudomonas multiresinivorans strain populi     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6047309..6058526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4G71_RS27590 (G4G71_27550) galE 6047807..6048823 (+) 1017 WP_169941836.1 UDP-glucose 4-epimerase GalE -
  G4G71_RS27600 (G4G71_27560) - 6049025..6049714 (-) 690 WP_169941838.1 hypothetical protein -
  G4G71_RS27605 (G4G71_27565) - 6049829..6050380 (-) 552 WP_169941840.1 pilin -
  G4G71_RS27610 (G4G71_27570) pilB 6050605..6052305 (+) 1701 WP_169941841.1 type IV-A pilus assembly ATPase PilB Machinery gene
  G4G71_RS27615 (G4G71_27575) pilC 6052309..6053526 (+) 1218 WP_205896252.1 type II secretion system F family protein Machinery gene
  G4G71_RS27620 (G4G71_27580) pilD 6053530..6054402 (+) 873 WP_169941842.1 prepilin peptidase Machinery gene
  G4G71_RS27625 (G4G71_27585) coaE 6054467..6055075 (+) 609 WP_169941843.1 dephospho-CoA kinase -
  G4G71_RS27630 (G4G71_27590) yacG 6055072..6055278 (+) 207 WP_024765636.1 DNA gyrase inhibitor YacG -
  G4G71_RS27635 (G4G71_27595) - 6055351..6055566 (-) 216 WP_054910366.1 hypothetical protein -
  G4G71_RS27640 (G4G71_27600) - 6055673..6056362 (-) 690 WP_169941844.1 energy-coupling factor ABC transporter permease -
  G4G71_RS27645 (G4G71_27605) - 6056359..6056793 (-) 435 WP_169942837.1 FAD/FMN-containing dehydrogenase -
  G4G71_RS27650 (G4G71_27610) - 6056915..6057544 (+) 630 WP_169941845.1 DUF1780 domain-containing protein -
  G4G71_RS27655 (G4G71_27615) - 6057639..6057809 (+) 171 WP_037011479.1 DUF3094 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44112.79 Da        Isoelectric Point: 9.9042

>NTDB_id=423412 G4G71_RS27615 WP_205896252.1 6052309..6053526(+) (pilC) [Pseudomonas multiresinivorans strain populi]
MAERALKTSVFVWEGTDRKGGKIKGELSGANTALVKAQLRKQGINPIKVRKKGISLLGKGKKIKPMDIALFTRQMATMMG
SGVPLLQSFDIIGEGFDNPNMRKLVDDIKQEVASGNSLANSLRKKPQYFDDLYCNLVDAGEQSGALEALLDRVATYKEKT
ESLKAKIKKAMTYPIAVVIVALIVSAILLIKVVPQFQSVFSNFGAELPAFTRMVIGLSETLQEWWLIVLIGLFAAAFAFK
EARNRSEKFRDFLDRALLKTPIVGMILYKSSIARYARTLSTTFAAGVPLVEALDSVAGATGNVVFRTAVNKIKQDVSSGT
QLNFSMRTTGVFPSMAIQMAAIGEESGSLDAMLDKVASYYEEEVDNAVDNLTTLMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGNVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=423412 G4G71_RS27615 WP_205896252.1 6052309..6053526(+) (pilC) [Pseudomonas multiresinivorans strain populi]
ATGGCGGAAAGAGCATTAAAAACGAGCGTCTTCGTCTGGGAAGGCACCGATAGAAAGGGCGGGAAGATCAAAGGGGAGCT
GTCGGGAGCCAATACGGCGCTCGTCAAGGCCCAGCTGCGCAAGCAGGGCATCAATCCGATCAAGGTCCGCAAGAAGGGAA
TCTCGCTTCTGGGCAAGGGCAAGAAGATCAAGCCCATGGATATCGCCCTGTTCACTCGGCAGATGGCGACCATGATGGGG
TCGGGCGTCCCCTTGCTGCAGTCCTTCGATATCATCGGCGAGGGCTTCGACAACCCAAACATGCGCAAGCTTGTCGATGA
CATCAAGCAAGAGGTCGCCTCAGGCAACAGCCTGGCCAACTCTCTGCGCAAGAAGCCGCAATATTTCGACGACCTGTACT
GCAACCTGGTTGACGCCGGCGAGCAGTCTGGTGCGCTTGAGGCTCTTCTGGATCGCGTTGCGACTTACAAGGAAAAGACC
GAGTCGCTCAAAGCGAAGATTAAGAAGGCGATGACCTATCCCATTGCGGTGGTCATCGTGGCGCTTATCGTTTCGGCGAT
CCTGCTAATCAAGGTGGTTCCTCAGTTCCAATCGGTATTTTCGAATTTCGGCGCGGAACTTCCAGCCTTTACCCGAATGG
TCATCGGCCTCTCCGAAACGCTTCAGGAGTGGTGGTTGATTGTATTGATCGGACTCTTCGCAGCCGCATTCGCCTTCAAG
GAAGCGCGTAACCGCTCGGAGAAATTCCGCGACTTTCTGGATCGCGCCCTGTTAAAGACGCCTATCGTGGGCATGATTCT
CTATAAATCCTCCATCGCCCGATATGCACGAACACTCTCCACCACGTTCGCGGCCGGTGTTCCCTTGGTAGAAGCCCTTG
ACTCGGTAGCCGGCGCAACTGGGAACGTGGTCTTCCGCACTGCGGTAAACAAGATCAAGCAGGACGTATCGTCGGGCACG
CAATTGAACTTCTCCATGCGCACCACCGGGGTCTTCCCCAGCATGGCCATCCAGATGGCGGCGATCGGTGAGGAATCCGG
CTCTTTGGATGCAATGCTCGACAAGGTCGCCAGCTACTACGAAGAAGAGGTCGACAACGCCGTCGATAACCTGACCACCC
TGATGGAACCCATGATCATGGCCGTCCTGGGCGTACTCGTAGGTGGCCTGATCATTGCCATGTACCTGCCGATCTTCCAA
CTGGGCAACGTCGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z3BR36

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

81.728

100

0.817
  pilC Acinetobacter baumannii D1279779

60.247

100

0.602
  pilC Acinetobacter baylyi ADP1

60.553

98.272

0.595
  pilC Legionella pneumophila strain ERS1305867

55.051

97.778

0.538
  pilG Neisseria meningitidis 44/76-A

44.776

99.259

0.444
  pilG Neisseria gonorrhoeae MS11

44.527

99.259

0.442
  pilC Vibrio cholerae strain A1552

43.21

100

0.432
  pilC Vibrio campbellii strain DS40M4

40.657

97.778

0.398
  pilC Thermus thermophilus HB27

36.658

99.012

0.363

Multiple sequence alignment