Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | G4G71_RS27620 | Genome accession | NZ_CP048833 |
| Coordinates | 6053530..6054402 (+) | Length | 290 a.a. |
| NCBI ID | WP_169941842.1 | Uniprot ID | A0A7Z3BR27 |
| Organism | Pseudomonas multiresinivorans strain populi | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 6048530..6059402
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G4G71_RS27600 (G4G71_27560) | - | 6049025..6049714 (-) | 690 | WP_169941838.1 | hypothetical protein | - |
| G4G71_RS27605 (G4G71_27565) | - | 6049829..6050380 (-) | 552 | WP_169941840.1 | pilin | - |
| G4G71_RS27610 (G4G71_27570) | pilB | 6050605..6052305 (+) | 1701 | WP_169941841.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| G4G71_RS27615 (G4G71_27575) | pilC | 6052309..6053526 (+) | 1218 | WP_205896252.1 | type II secretion system F family protein | Machinery gene |
| G4G71_RS27620 (G4G71_27580) | pilD | 6053530..6054402 (+) | 873 | WP_169941842.1 | prepilin peptidase | Machinery gene |
| G4G71_RS27625 (G4G71_27585) | coaE | 6054467..6055075 (+) | 609 | WP_169941843.1 | dephospho-CoA kinase | - |
| G4G71_RS27630 (G4G71_27590) | yacG | 6055072..6055278 (+) | 207 | WP_024765636.1 | DNA gyrase inhibitor YacG | - |
| G4G71_RS27635 (G4G71_27595) | - | 6055351..6055566 (-) | 216 | WP_054910366.1 | hypothetical protein | - |
| G4G71_RS27640 (G4G71_27600) | - | 6055673..6056362 (-) | 690 | WP_169941844.1 | energy-coupling factor ABC transporter permease | - |
| G4G71_RS27645 (G4G71_27605) | - | 6056359..6056793 (-) | 435 | WP_169942837.1 | FAD/FMN-containing dehydrogenase | - |
| G4G71_RS27650 (G4G71_27610) | - | 6056915..6057544 (+) | 630 | WP_169941845.1 | DUF1780 domain-containing protein | - |
| G4G71_RS27655 (G4G71_27615) | - | 6057639..6057809 (+) | 171 | WP_037011479.1 | DUF3094 domain-containing protein | - |
| G4G71_RS27660 (G4G71_27620) | - | 6057863..6059161 (+) | 1299 | WP_169941846.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31983.97 Da Isoelectric Point: 7.0081
>NTDB_id=423413 G4G71_RS27620 WP_169941842.1 6053530..6054402(+) (pilD) [Pseudomonas multiresinivorans strain populi]
MPVFDLLASTPLAFVLCATLLGLLVGSFLNVVIHRLPRMMELDWQQQARETLGLPEGEKRPTYNLVLPNSQCPHCSHEIK
PWENIPVVSWLVLGGKCSSCKAPISKRYPLIELACGALSAFVAWHYGFGWQAGAMLLLTWGLLAMSMIDVDHQLLPDALV
LPLLWLGLIVNHFGLFTNLGDALWGAVFGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSLVG
AVLGVIMLRLRNAETSTPIPFGPYLAIAGWIALLWGDQITATYLQFAGFR
MPVFDLLASTPLAFVLCATLLGLLVGSFLNVVIHRLPRMMELDWQQQARETLGLPEGEKRPTYNLVLPNSQCPHCSHEIK
PWENIPVVSWLVLGGKCSSCKAPISKRYPLIELACGALSAFVAWHYGFGWQAGAMLLLTWGLLAMSMIDVDHQLLPDALV
LPLLWLGLIVNHFGLFTNLGDALWGAVFGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSLVG
AVLGVIMLRLRNAETSTPIPFGPYLAIAGWIALLWGDQITATYLQFAGFR
Nucleotide
Download Length: 873 bp
>NTDB_id=423413 G4G71_RS27620 WP_169941842.1 6053530..6054402(+) (pilD) [Pseudomonas multiresinivorans strain populi]
ATGCCTGTTTTCGACCTCCTGGCCAGCACCCCGCTGGCCTTTGTTTTATGTGCCACCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTTGTGATCCATCGCCTGCCGCGGATGATGGAGCTGGACTGGCAGCAGCAGGCGCGGGAAACCCTCGGCC
TGCCGGAGGGCGAGAAGCGTCCGACCTATAACCTGGTCCTGCCTAACTCCCAGTGCCCGCATTGCTCCCACGAGATCAAG
CCCTGGGAGAACATCCCGGTTGTCAGTTGGCTGGTGCTGGGCGGCAAGTGTTCGTCGTGCAAGGCGCCGATCAGCAAGCG
TTATCCGCTGATCGAGCTGGCGTGCGGTGCGCTGTCGGCGTTCGTCGCCTGGCATTATGGCTTCGGCTGGCAGGCCGGGG
CGATGCTGCTGCTGACCTGGGGCCTGCTGGCGATGAGCATGATCGACGTCGATCATCAGTTGCTGCCGGACGCCCTGGTG
CTGCCGCTGCTCTGGCTGGGGCTGATCGTCAACCACTTCGGGCTCTTCACCAACCTGGGCGATGCGCTCTGGGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTACTGGCTGTTCAAGCTGGTCACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGCGCCTGGGGTGGCTGGCAGGTGCTGCCGCTGACCATCTTGCTGTCGTCGCTGGTAGGG
GCGGTGCTGGGGGTGATCATGCTGCGCCTGCGCAATGCCGAGACCAGTACGCCGATCCCCTTCGGCCCCTATCTGGCCAT
CGCTGGCTGGATTGCGCTGCTCTGGGGTGATCAAATAACCGCGACCTATCTGCAGTTCGCCGGTTTCCGCTAG
ATGCCTGTTTTCGACCTCCTGGCCAGCACCCCGCTGGCCTTTGTTTTATGTGCCACCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTTGTGATCCATCGCCTGCCGCGGATGATGGAGCTGGACTGGCAGCAGCAGGCGCGGGAAACCCTCGGCC
TGCCGGAGGGCGAGAAGCGTCCGACCTATAACCTGGTCCTGCCTAACTCCCAGTGCCCGCATTGCTCCCACGAGATCAAG
CCCTGGGAGAACATCCCGGTTGTCAGTTGGCTGGTGCTGGGCGGCAAGTGTTCGTCGTGCAAGGCGCCGATCAGCAAGCG
TTATCCGCTGATCGAGCTGGCGTGCGGTGCGCTGTCGGCGTTCGTCGCCTGGCATTATGGCTTCGGCTGGCAGGCCGGGG
CGATGCTGCTGCTGACCTGGGGCCTGCTGGCGATGAGCATGATCGACGTCGATCATCAGTTGCTGCCGGACGCCCTGGTG
CTGCCGCTGCTCTGGCTGGGGCTGATCGTCAACCACTTCGGGCTCTTCACCAACCTGGGCGATGCGCTCTGGGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTACTGGCTGTTCAAGCTGGTCACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGCGCCTGGGGTGGCTGGCAGGTGCTGCCGCTGACCATCTTGCTGTCGTCGCTGGTAGGG
GCGGTGCTGGGGGTGATCATGCTGCGCCTGCGCAATGCCGAGACCAGTACGCCGATCCCCTTCGGCCCCTATCTGGCCAT
CGCTGGCTGGATTGCGCTGCTCTGGGGTGATCAAATAACCGCGACCTATCTGCAGTTCGCCGGTTTCCGCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
53.873 |
97.931 |
0.528 |
| pilD | Vibrio campbellii strain DS40M4 |
52.817 |
97.931 |
0.517 |
| pilD | Acinetobacter baumannii D1279779 |
53.623 |
95.172 |
0.51 |
| pilD | Acinetobacter nosocomialis M2 |
53.65 |
94.483 |
0.507 |
| pilD | Neisseria gonorrhoeae MS11 |
50.181 |
95.517 |
0.479 |