Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   G0030_RS01330 Genome accession   NZ_CP048681
Coordinates   283249..285387 (+) Length   712 a.a.
NCBI ID   WP_180182089.1    Uniprot ID   -
Organism   Acinetobacter indicus strain Q186-3_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 278249..290387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G0030_RS01310 (G0030_01310) pilM 280252..281310 (+) 1059 WP_016658445.1 pilus assembly protein PilM Machinery gene
  G0030_RS01315 (G0030_01315) pilN 281310..281945 (+) 636 WP_180182073.1 PilN domain-containing protein Machinery gene
  G0030_RS01320 (G0030_01320) pilO 281942..282661 (+) 720 WP_005180513.1 type 4a pilus biogenesis protein PilO Machinery gene
  G0030_RS01325 (G0030_01325) pilP 282661..283188 (+) 528 WP_104489345.1 pilus assembly protein PilP Machinery gene
  G0030_RS01330 (G0030_01330) pilQ 283249..285387 (+) 2139 WP_180182089.1 type IV pilus secretin PilQ Machinery gene
  G0030_RS01335 (G0030_01335) aroK 285424..285966 (+) 543 WP_075167858.1 shikimate kinase AroK -
  G0030_RS01340 (G0030_01340) aroB 285989..287071 (+) 1083 WP_180182072.1 3-dehydroquinate synthase -
  G0030_RS01345 (G0030_01345) - 287084..287920 (+) 837 WP_104472445.1 hypothetical protein -

Sequence

Protein


Download         Length: 712 a.a.        Molecular weight: 76829.97 Da        Isoelectric Point: 5.0523

>NTDB_id=422225 G0030_RS01330 WP_180182089.1 283249..285387(+) (pilQ) [Acinetobacter indicus strain Q186-3_T]
MNNLFRQFSMGAVAMAVMQVANAQVSITNIVPMQIPGQGTEIRVMFNGLPSQPAAYQLEQPSRLVLDFDKAQQSLKQASI
PVATREASSVDVSSDAQRARLTVNLAEAGAFTTRVEGNTFILKINSTQPAATPVAIQQTAQGVSNIGFQRGAEGEGQVVI
DLAGSNTPVDVQQQGSKIIVRTLGNKIPAHLARRLNVNDFATPVSTIDAQNDGGNGVITIQSAGSYEYMAYQAENKLTIS
LKRPVDKNPFKPRAAQSYTGKKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIILKTKNLD
KRRNGNVIWIAPVAELIKAEEEEAKAIAQSVKLAPLQTEYIQLNYAKAADIEKLITDGKNASNSRGGTNSGSGADPLGDS
VGSLLSPRGTVSVDPRTNTLIINDTAQKIDQIRGMIDLLDVSVKQVMIEARIVRATTDFTKEMGVKWGILSQGIMNNNHL
LVGGSDTTLWNLREPEFDDERGGYTYEIERPQNLNVDLGVTSPGASRIAFGLISLSDFMLDLELSALQADGYGEVISTPK
VLTADKQQAKVASGTQIPYQSAEGGGVNAVSTTEFIDATLSLDVTPSITPDGKVQMNLNITSDSPGAPTPTGQLTINKNS
INTNVLVDNGETVVLGGIFEQQTANQQTKVPFLGDIPYLGRLFRKDIKSDNKRELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2139 bp        

>NTDB_id=422225 G0030_RS01330 WP_180182089.1 283249..285387(+) (pilQ) [Acinetobacter indicus strain Q186-3_T]
ATGAACAATTTGTTCCGTCAGTTTTCAATGGGCGCTGTTGCGATGGCCGTCATGCAAGTGGCCAATGCGCAGGTCAGCAT
TACCAATATTGTACCAATGCAAATTCCAGGACAAGGTACTGAAATTCGTGTCATGTTCAATGGCTTGCCATCTCAGCCTG
CAGCCTATCAGCTTGAGCAGCCATCACGTTTGGTGCTGGATTTTGATAAAGCCCAGCAGAGCTTAAAACAGGCCAGCATT
CCGGTTGCAACCCGGGAAGCCAGCTCGGTGGATGTCAGTTCCGATGCCCAGCGTGCACGTTTAACGGTTAATCTGGCTGA
AGCGGGTGCTTTTACTACCCGTGTTGAAGGCAATACTTTTATTCTTAAAATTAACAGCACTCAGCCAGCCGCAACACCAG
TGGCTATACAGCAGACAGCTCAAGGCGTATCAAATATTGGCTTCCAGCGCGGTGCAGAAGGGGAAGGTCAGGTAGTAATT
GACCTGGCAGGCAGCAACACCCCGGTCGATGTACAACAGCAAGGCAGTAAAATTATTGTCCGTACCTTGGGCAATAAAAT
TCCTGCACATCTGGCGCGCCGTTTAAACGTCAATGATTTTGCCACCCCGGTATCTACCATTGATGCGCAAAATGATGGTG
GCAATGGGGTAATTACTATTCAGTCTGCCGGAAGCTATGAATATATGGCGTATCAGGCAGAAAATAAACTGACCATCAGT
CTGAAACGTCCGGTAGATAAGAACCCGTTCAAACCGCGTGCAGCACAAAGCTATACCGGCAAAAAGATTTCTTTAGATTT
CCAGGATATTGAAGTGCGTCGTGTGCTGCAGTTACTGGCTGATTTTACCGGAATTAACATGGTTGCCGCCGATACGGTAC
AAGGCAATATCACCTTACGTCTCAAAGATGTGCCGTGGGATCAGGCACTAGATATTATTTTAAAAACCAAAAATCTGGAT
AAACGCCGTAATGGCAATGTGATCTGGATTGCACCCGTCGCAGAGCTGATCAAGGCCGAAGAAGAAGAAGCCAAAGCGAT
TGCACAAAGCGTCAAGCTGGCGCCGCTGCAAACCGAATATATCCAGTTAAATTATGCCAAGGCTGCTGATATTGAAAAAC
TGATTACTGATGGTAAAAACGCATCCAATTCTCGAGGCGGCACAAATTCGGGTTCTGGGGCAGATCCACTTGGTGATAGC
GTCGGTAGTCTGCTCAGCCCACGTGGTACAGTGTCAGTCGATCCACGAACCAATACCCTGATTATTAATGATACTGCACA
AAAAATTGACCAGATTCGCGGCATGATTGACTTGCTGGATGTATCGGTGAAACAGGTGATGATTGAAGCGCGTATTGTGC
GTGCCACCACTGACTTCACCAAAGAGATGGGGGTCAAGTGGGGCATCCTGTCACAAGGGATCATGAATAATAACCATCTT
CTGGTCGGTGGTAGTGATACCACACTGTGGAATTTACGTGAGCCGGAATTTGACGATGAGCGTGGTGGTTATACCTATGA
AATTGAACGTCCACAAAACTTGAATGTCGATTTGGGGGTCACCAGCCCAGGTGCGAGCCGGATTGCTTTTGGTCTCATCA
GCCTGTCTGACTTTATGCTGGATTTAGAACTGTCTGCCCTACAAGCTGATGGTTATGGTGAAGTGATTTCGACACCGAAA
GTACTGACTGCTGATAAGCAACAGGCCAAAGTGGCTTCAGGTACGCAGATCCCGTATCAGTCTGCTGAAGGAGGCGGTGT
CAATGCGGTATCCACCACAGAGTTTATTGATGCAACTTTAAGTCTGGATGTTACGCCAAGCATTACCCCGGATGGTAAAG
TGCAGATGAACCTGAATATCACCAGTGATAGTCCGGGAGCACCAACGCCGACCGGTCAGCTGACGATTAACAAAAACTCG
ATCAATACCAATGTACTGGTCGATAATGGTGAAACCGTCGTGCTCGGTGGTATTTTTGAGCAGCAGACAGCCAATCAGCA
AACCAAAGTGCCATTCCTGGGGGATATTCCGTATTTAGGCCGTTTATTCCGTAAAGATATTAAATCGGACAATAAACGTG
AGTTGCTGATTTTTGTGACACCACGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(41-108)

Secretin and TonB N terminus short domain (STN)

(290-332)

Bacterial type II and III secretion system protein (Secretin)

(546-704)

Bacterial type II/III secretion system short domain (Secretin_N)

(359-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

76.593

100

0.777
  pilQ Acinetobacter baumannii strain A118

76.454

100

0.775
  comQ Acinetobacter baylyi ADP1

74.37

100

0.746
  pilQ Pseudomonas aeruginosa PAK

40.656

98.455

0.4
  pilQ Legionella pneumophila strain Lp02

38.19

99.298

0.379
  pilQ Legionella pneumophila strain ERS1305867

38.19

99.298

0.379

Multiple sequence alignment