Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   G0030_RS01320 Genome accession   NZ_CP048681
Coordinates   281942..282661 (+) Length   239 a.a.
NCBI ID   WP_005180513.1    Uniprot ID   N9KYM2
Organism   Acinetobacter indicus strain Q186-3_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 276942..287661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G0030_RS01305 (G0030_01305) ponA 277504..280080 (-) 2577 WP_180182074.1 penicillin-binding protein PBP1a -
  G0030_RS01310 (G0030_01310) pilM 280252..281310 (+) 1059 WP_016658445.1 pilus assembly protein PilM Machinery gene
  G0030_RS01315 (G0030_01315) pilN 281310..281945 (+) 636 WP_180182073.1 PilN domain-containing protein Machinery gene
  G0030_RS01320 (G0030_01320) pilO 281942..282661 (+) 720 WP_005180513.1 type 4a pilus biogenesis protein PilO Machinery gene
  G0030_RS01325 (G0030_01325) pilP 282661..283188 (+) 528 WP_104489345.1 pilus assembly protein PilP Machinery gene
  G0030_RS01330 (G0030_01330) pilQ 283249..285387 (+) 2139 WP_180182089.1 type IV pilus secretin PilQ Machinery gene
  G0030_RS01335 (G0030_01335) aroK 285424..285966 (+) 543 WP_075167858.1 shikimate kinase AroK -
  G0030_RS01340 (G0030_01340) aroB 285989..287071 (+) 1083 WP_180182072.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 27087.71 Da        Isoelectric Point: 5.1311

>NTDB_id=422223 G0030_RS01320 WP_005180513.1 281942..282661(+) (pilO) [Acinetobacter indicus strain Q186-3_T]
MSLDQYEEMNQDPVAAPKKKMTLDKFLQQWNTLDPNNYGSWPFSVKLTIWIFIIILIAFLGYFLAIKPKLDAISNARAQE
QNLLNEFREKDSKLRNLQQYQAQLQEMEANFNQQLQQLPKETEIPGLVEDVNVTGVNSGLRFKNIRLENEIKQEFFIEQP
ISIEATGDYHAFGSFVSGTAALPRIVTMHDFTITAGENKEKKTDIPQITYVAKAKTYRYVGNTDAQAGNSTTPATGAAQ

Nucleotide


Download         Length: 720 bp        

>NTDB_id=422223 G0030_RS01320 WP_005180513.1 281942..282661(+) (pilO) [Acinetobacter indicus strain Q186-3_T]
ATGAGTCTCGATCAATATGAAGAAATGAATCAGGATCCTGTTGCTGCGCCAAAGAAAAAAATGACGCTGGATAAATTCCT
GCAGCAATGGAATACCTTAGATCCGAATAACTATGGCAGCTGGCCGTTTTCCGTCAAGCTGACCATCTGGATCTTTATCA
TTATTTTAATTGCCTTCCTGGGCTATTTCCTGGCCATCAAGCCGAAGCTGGATGCAATTTCCAATGCGCGTGCACAAGAG
CAGAACCTGCTGAATGAGTTTCGTGAAAAAGATTCCAAACTGCGTAACTTGCAGCAATATCAGGCGCAGTTACAGGAAAT
GGAAGCCAACTTTAACCAGCAGCTACAACAGTTGCCAAAAGAAACCGAAATTCCAGGTCTGGTTGAAGATGTGAACGTTA
CGGGCGTGAATTCAGGCTTAAGATTTAAAAATATCCGTCTGGAAAATGAAATCAAGCAAGAGTTCTTTATCGAGCAGCCA
ATTTCGATTGAAGCCACCGGTGATTATCACGCTTTTGGTTCTTTTGTCAGTGGTACAGCCGCTTTACCGCGAATTGTGAC
CATGCATGATTTCACCATTACTGCCGGTGAAAACAAGGAAAAGAAAACCGATATTCCACAAATTACCTATGTCGCGAAAG
CCAAGACCTATCGCTATGTCGGGAATACCGATGCACAGGCAGGGAATAGCACGACTCCAGCCACAGGAGCAGCACAATGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9KYM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

69.748

99.582

0.695
  comO Acinetobacter baylyi ADP1

67.213

100

0.686

Multiple sequence alignment