Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   G3M63_RS00080 Genome accession   NZ_CP048629
Coordinates   21118..22383 (+) Length   421 a.a.
NCBI ID   WP_150299529.1    Uniprot ID   -
Organism   Pseudomonas sp. OIL-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 16118..27383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3M63_RS00060 (G3M63_00060) - 16199..17763 (+) 1565 WP_163984141.1 IS3 family transposase -
  G3M63_RS00065 (G3M63_00065) - 17708..18517 (-) 810 WP_163981511.1 hypothetical protein -
  G3M63_RS00070 (G3M63_00070) pilA 18612..19052 (-) 441 WP_163981512.1 pilin Machinery gene
  G3M63_RS00075 (G3M63_00075) pilB 19414..21114 (+) 1701 WP_163981513.1 type IV-A pilus assembly ATPase PilB Machinery gene
  G3M63_RS00080 (G3M63_00080) pilC 21118..22383 (+) 1266 WP_150299529.1 type II secretion system F family protein Machinery gene
  G3M63_RS00085 (G3M63_00085) pilD 22387..23259 (+) 873 WP_163981514.1 A24 family peptidase Machinery gene
  G3M63_RS00090 (G3M63_00090) coaE 23261..23866 (+) 606 WP_163981515.1 dephospho-CoA kinase -
  G3M63_RS00095 (G3M63_00095) yacG 23863..24054 (+) 192 WP_150303146.1 DNA gyrase inhibitor YacG -
  G3M63_RS00100 (G3M63_00100) - 24072..25016 (+) 945 WP_163981516.1 Nudix family hydrolase -
  G3M63_RS00105 (G3M63_00105) ispH 25264..26211 (-) 948 WP_163981517.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  G3M63_RS00110 (G3M63_00110) fkpB 26243..26680 (-) 438 WP_150299523.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  G3M63_RS00115 (G3M63_00115) lspA 26844..27338 (-) 495 WP_150299522.1 signal peptidase II -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 45918.95 Da        Isoelectric Point: 10.0704

>NTDB_id=421957 G3M63_RS00080 WP_150299529.1 21118..22383(+) (pilC) [Pseudomonas sp. OIL-1]
MAQQAAALKRKPAPAKKKAKEPKIYPFKWEGKDRKGTKISGEIQGTNPALIKAQLRKQGILVTRINKSSTLFGKRSKAIK
PLDIAFFTRQLATMMESGVPIVQAFEIIAEGAENPSLAKLVNTIKTDVAAGNTLADSLRQHPKYFDDLFCNLVESGEQSG
RLESLLDRIATYKEKTEALKAKIKKAMTYPIAVVVVAIVVTAILLLKVVPQFKEVFSSFGAELPAFTLFVIGLSEWLQSW
WFIILIGLIVLGYVYTQVNRKSLKFRDAQDRALLKAPVVGKIIYEAAVARYARTLSTTFAAGVPLVDALDSVGGAVGNVV
FRNAVMKVKEDVSAGSQLNFSMRTTNVFPSLAVQMAGIGEESGNLDGMLEKVADYYEAEVDNKVDNLTTLLEPLIMSVLG
VLVGGLIIAMYLPIFQLGSVV

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=421957 G3M63_RS00080 WP_150299529.1 21118..22383(+) (pilC) [Pseudomonas sp. OIL-1]
ATGGCTCAGCAAGCAGCAGCGCTAAAAAGGAAGCCGGCCCCGGCGAAGAAGAAGGCCAAGGAACCCAAGATCTATCCCTT
CAAATGGGAAGGCAAGGATCGCAAGGGCACGAAGATCTCCGGCGAAATCCAGGGAACCAACCCAGCGCTGATCAAGGCCC
AGCTGCGCAAGCAGGGCATTCTCGTCACCAGGATCAACAAAAGCTCCACCCTGTTCGGCAAACGTAGCAAGGCGATCAAA
CCCCTTGATATTGCCTTCTTCACGCGTCAGCTCGCGACCATGATGGAATCCGGCGTGCCGATTGTGCAGGCCTTCGAGAT
CATTGCCGAGGGCGCTGAAAATCCCAGTCTGGCAAAACTGGTCAACACCATCAAAACAGATGTGGCCGCCGGCAATACCC
TGGCGGATTCGCTGCGCCAGCATCCCAAGTATTTTGATGACCTGTTCTGCAACCTGGTTGAGTCCGGTGAGCAATCGGGT
CGACTCGAATCCCTGCTGGACCGGATTGCGACCTACAAGGAAAAGACCGAAGCACTCAAGGCCAAAATCAAGAAGGCCAT
GACCTACCCGATCGCGGTGGTAGTCGTTGCCATCGTGGTAACGGCGATCCTGTTGCTGAAGGTGGTTCCACAGTTCAAGG
AAGTGTTTTCAAGCTTCGGTGCAGAGCTGCCGGCCTTCACGCTTTTCGTCATCGGGTTGTCTGAATGGCTGCAGTCCTGG
TGGTTCATTATCCTGATAGGGCTGATTGTGTTGGGCTACGTCTATACGCAGGTTAACCGGAAATCCCTCAAGTTCCGCGA
CGCACAGGACCGGGCGCTGCTCAAGGCGCCCGTCGTGGGCAAGATCATCTACGAAGCCGCCGTGGCACGTTACGCCCGCA
CCCTCTCCACCACCTTCGCTGCCGGTGTACCGCTTGTGGATGCGCTCGACTCGGTCGGTGGCGCGGTGGGTAACGTGGTT
TTCCGCAATGCTGTGATGAAGGTCAAGGAAGATGTATCGGCAGGTTCCCAGCTGAACTTCTCGATGCGCACCACCAACGT
GTTCCCCTCACTCGCTGTGCAGATGGCTGGCATCGGCGAGGAATCCGGTAACCTCGATGGCATGCTTGAAAAGGTCGCCG
ACTATTACGAGGCTGAAGTGGATAACAAGGTCGACAACCTGACCACGCTGCTGGAACCTCTGATCATGAGCGTGCTCGGG
GTGCTCGTCGGCGGTTTGATCATCGCCATGTACCTGCCAATCTTCCAGCTGGGCTCTGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(292-413)

Type II secretion system (T2SS), protein F (T2SSF)

(87-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

68.608

93.824

0.644
  pilC Acinetobacter baylyi ADP1

59.314

96.912

0.575
  pilC Acinetobacter baumannii D1279779

58.272

96.2

0.561
  pilC Legionella pneumophila strain ERS1305867

53.846

95.724

0.515
  pilG Neisseria meningitidis 44/76-A

43.108

94.774

0.409
  pilG Neisseria gonorrhoeae MS11

42.857

94.774

0.406
  pilC Vibrio campbellii strain DS40M4

41.422

96.912

0.401
  pilC Vibrio cholerae strain A1552

41.709

94.537

0.394

Multiple sequence alignment