Detailed information NTG0421958

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: G3M63_RS00085
• Genome accession: NZ_CP048629
• Coordinates: 22387..23259 (+)
• Length: 290 a.a.
• NCBI ID: WP_163981514.1
• Uniprot ID: -
• Organism: Pseudomonas sp. OIL-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 17387..28259

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G3M63_RS00065 (G3M63_00065)	-	17708..18517 (-)	810	WP_163981511.1	hypothetical protein	-
G3M63_RS00070 (G3M63_00070)	pilA	18612..19052 (-)	441	WP_163981512.1	pilin	Machinery gene
G3M63_RS00075 (G3M63_00075)	pilB	19414..21114 (+)	1701	WP_163981513.1	type IV-A pilus assembly ATPase PilB	Machinery gene
G3M63_RS00080 (G3M63_00080)	pilC	21118..22383 (+)	1266	WP_150299529.1	type II secretion system F family protein	Machinery gene
G3M63_RS00085 (G3M63_00085)	pilD	22387..23259 (+)	873	WP_163981514.1	A24 family peptidase	Machinery gene
G3M63_RS00090 (G3M63_00090)	coaE	23261..23866 (+)	606	WP_163981515.1	dephospho-CoA kinase	-
G3M63_RS00095 (G3M63_00095)	yacG	23863..24054 (+)	192	WP_150303146.1	DNA gyrase inhibitor YacG	-
G3M63_RS00100 (G3M63_00100)	-	24072..25016 (+)	945	WP_163981516.1	Nudix family hydrolase	-
G3M63_RS00105 (G3M63_00105)	ispH	25264..26211 (-)	948	WP_163981517.1	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	-
G3M63_RS00110 (G3M63_00110)	fkpB	26243..26680 (-)	438	WP_150299523.1	FKBP-type peptidyl-prolyl cis-trans isomerase	-
G3M63_RS00115 (G3M63_00115)	lspA	26844..27338 (-)	495	WP_150299522.1	signal peptidase II	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31949.87 Da
• Isoelectric Point: 7.0269

>NTDB_id=421958 G3M63_RS00085 WP_163981514.1 22387..23259(+) (pilD) [Pseudomonas sp. OIL-1]
MTLIDYLASHVLAFVLLAGLLGLIIGSFLNVVIHRLPRMMERDWRIQAREILQPGPEHPDEPTYNLVLPHSHCPHCQTEI
KAWQNVPVVSYVFLRGRCGQCKNRISPRYPLVELLTAALSMVVAWQLGFGWAAGGLLVLTWGLVALSLIDADTQLLPDVI
VLPLLWLGLIVNSFGVYTDLDTALWGAVFGYLSLWSVYWLFKLITGKEGMGYGDFKLLAMIGAWGGWQVLPLTILLSSLV
GAILGIIILKSRGDSNATPLPFGPYLAIAGWIALIWGDTITGTYLRFAGL

Nucleotide

• Length: 873 bp

>NTDB_id=421958 G3M63_RS00085 WP_163981514.1 22387..23259(+) (pilD) [Pseudomonas sp. OIL-1]
ATGACTCTTATTGATTACCTGGCCAGCCACGTGCTGGCCTTTGTTTTGCTCGCTGGCCTGCTGGGTTTGATTATCGGCAG
TTTTCTCAACGTCGTGATCCATCGCTTGCCGCGCATGATGGAGCGGGACTGGCGCATACAGGCGCGGGAGATTCTCCAGC
CTGGCCCTGAGCACCCCGACGAGCCTACTTACAATCTGGTTCTGCCCCATTCCCATTGCCCGCATTGCCAGACCGAGATC
AAAGCCTGGCAAAACGTGCCCGTGGTGAGTTATGTATTCCTGCGCGGCCGCTGCGGCCAGTGCAAGAACCGGATCAGCCC
GCGCTATCCGCTGGTGGAGCTGCTGACGGCTGCGCTATCCATGGTCGTTGCATGGCAGCTTGGTTTCGGCTGGGCGGCCG
GCGGGCTATTGGTGCTGACCTGGGGTTTGGTCGCGCTGAGCCTGATTGATGCCGACACCCAGCTGCTTCCTGATGTCATC
GTTCTACCGCTGTTGTGGCTGGGGCTGATCGTCAACAGCTTCGGCGTGTATACCGATCTCGACACTGCCTTGTGGGGCGC
CGTGTTCGGCTACCTCAGCCTGTGGTCCGTGTATTGGCTGTTCAAGCTGATCACCGGCAAGGAAGGCATGGGCTACGGGG
ATTTCAAGCTGCTGGCAATGATTGGCGCCTGGGGTGGCTGGCAGGTATTGCCGCTAACCATCCTGCTTTCATCTCTCGTC
GGCGCGATTCTCGGCATCATTATTCTGAAAAGCCGCGGCGATTCCAACGCCACTCCCCTGCCCTTCGGCCCCTACCTGGC
GATTGCCGGGTGGATTGCCTTAATCTGGGGTGACACAATTACCGGCACCTATCTCAGATTTGCCGGATTATAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-246)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	53.004	97.586	0.517
pilD	Acinetobacter nosocomialis M2	52.65	97.586	0.514
pilD	Vibrio cholerae strain A1552	54.212	94.138	0.51
pilD	Vibrio campbellii strain DS40M4	51.812	95.172	0.493
pilD	Neisseria gonorrhoeae MS11	50.376	91.724	0.462