Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BURJV3_RS16235 Genome accession   NC_015947
Coordinates   3546028..3547287 (+) Length   419 a.a.
NCBI ID   WP_014038266.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia JV3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3541028..3552287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BURJV3_RS16220 (BurJV3_3200) pilR 3541146..3542519 (+) 1374 WP_014038262.1 sigma-54 dependent transcriptional regulator Regulator
  BURJV3_RS16225 (BurJV3_3201) pilB 3542792..3544522 (-) 1731 WP_014038263.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BURJV3_RS20975 (BurJV3_3202) - 3544747..3545154 (-) 408 WP_014038264.1 pilin -
  BURJV3_RS16230 (BurJV3_3203) pilA/pilAI 3545258..3545671 (-) 414 WP_014038265.1 pilin Machinery gene
  BURJV3_RS16235 (BurJV3_3204) pilC 3546028..3547287 (+) 1260 WP_014038266.1 type II secretion system F family protein Machinery gene
  BURJV3_RS16240 (BurJV3_3205) - 3547295..3548158 (+) 864 WP_005418626.1 A24 family peptidase -
  BURJV3_RS16245 (BurJV3_3206) coaE 3548170..3548781 (+) 612 WP_014038267.1 dephospho-CoA kinase -
  BURJV3_RS16250 (BurJV3_3207) - 3548874..3549587 (-) 714 WP_014038268.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45634.01 Da        Isoelectric Point: 10.1706

>NTDB_id=42163 BURJV3_RS16235 WP_014038266.1 3546028..3547287(+) (pilC) [Stenotrophomonas maltophilia JV3]
MSVSRSAIKKEPVARSTTELQPFVWEGTDKRGVKMKGEQAAKNANLLRAELRRQGITPGAVKPKPKPLFGAAGSKISPKD
IAFFSRQMATMMKSGVPIVGALDIIASGHKNPRMKKMVESVRTDIEGGSSLYEAVSKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKAMFYPAMVLAVALLVSGILLVWVVPQFEDVFKGFGADLPAFTQMIVNMSRFMVSWWWL
ILLIIIGSIVGFIAAYKRSPKMQHSMDRLVLKLPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNTVYEH
AVLRMRDDVSVGYPVNMAMKQTALFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLLEPIIMVIIGTIV
GGMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=42163 BURJV3_RS16235 WP_014038266.1 3546028..3547287(+) (pilC) [Stenotrophomonas maltophilia JV3]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAGGAGCCCGTGGCGCGCAGCACCACGGAGCTGCAGCCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGCGTGAAGATGAAGGGAGAGCAGGCCGCGAAGAACGCGAACCTGCTGCGGGCTGAGTTGCGCCGCC
AGGGAATTACCCCCGGCGCCGTAAAGCCAAAGCCCAAGCCATTGTTCGGTGCGGCCGGCAGCAAGATCTCACCGAAGGAC
ATCGCGTTCTTCAGCCGACAGATGGCCACCATGATGAAGTCCGGCGTGCCGATCGTTGGTGCACTGGACATCATCGCCAG
CGGGCACAAGAACCCGCGCATGAAAAAGATGGTGGAGTCGGTCCGCACCGACATTGAAGGCGGCTCGTCGTTGTACGAGG
CCGTCAGCAAGCACCCTGTCCAGTTTGACGAGCTCTACCGCAACCTAGTACGGGCTGGTGAAGGCGCCGGCGTGCTTGAA
ACGGTACTTGATACCGTCGCCACCTATAAAGAGAACATCGAAGCCCTGAAGGGCAAGATCAAGAAGGCGATGTTCTATCC
CGCCATGGTGCTGGCAGTCGCCCTGCTGGTCAGTGGCATCCTGCTCGTCTGGGTGGTGCCGCAGTTTGAGGACGTGTTCA
AGGGATTCGGCGCGGACCTTCCCGCATTTACCCAGATGATCGTGAACATGTCGCGCTTCATGGTCTCGTGGTGGTGGCTG
ATCCTGCTGATCATCATTGGTTCGATCGTCGGCTTCATTGCCGCCTACAAACGGTCGCCGAAGATGCAGCACAGCATGGA
CAGGCTGGTCCTGAAGCTGCCGGTCATCGGGCAGATCATGCACAACAGCTCGATCGCCCGCTTTGCCCGTACCACCGCCG
TGACCTTCAAGGCCGGCGTGCCGCTGGTGGAGGCCCTGGGCATCGTGGCAGGCGCCACCGGCAATACGGTTTACGAGCAT
GCCGTATTGCGCATGCGCGACGACGTGTCGGTCGGTTACCCGGTCAACATGGCCATGAAGCAGACCGCCCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGTGAAGAGGCCGGCGCCTTGGACGCCATGCTGTTCAAGGTGGCCGAGTACTATG
AGCAGGAGGTCAACAATGCCGTTGACGCCCTGAGCAGCCTGCTGGAGCCGATCATCATGGTGATCATTGGTACCATCGTT
GGCGGCATGGTCATCGGCATGTACCTGCCGATCTTCAAGCTCGCTTCCGTCGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.465

96.42

0.516
  pilC Acinetobacter baylyi ADP1

52.463

96.897

0.508
  pilC Pseudomonas stutzeri DSM 10701

53.283

94.511

0.504
  pilC Acinetobacter baumannii D1279779

51.889

94.749

0.492
  pilG Neisseria gonorrhoeae MS11

44

95.465

0.42
  pilG Neisseria meningitidis 44/76-A

43.5

95.465

0.415
  pilC Vibrio cholerae strain A1552

40.887

96.897

0.396
  pilC Vibrio campbellii strain DS40M4

40.15

95.704

0.384

Multiple sequence alignment