Detailed information NTG0042160

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: BURJV3_RS16220
• Genome accession: NC_015947
• Coordinates: 3541146..3542519 (+)
• Length: 457 a.a.
• NCBI ID: WP_014038262.1
• Uniprot ID: A0A397NJ72
• Organism: Stenotrophomonas maltophilia JV3
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3536146..3547519

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BURJV3_RS16205 (BurJV3_3197)	sucD	3537001..3537876 (-)	876	WP_005410793.1	succinate--CoA ligase subunit alpha	-
BURJV3_RS16210 (BurJV3_3198)	sucC	3537897..3539066 (-)	1170	WP_004154430.1	ADP-forming succinate--CoA ligase subunit beta	-
BURJV3_RS16215 (BurJV3_3199)	-	3539472..3541085 (+)	1614	WP_014038261.1	ATP-binding protein	-
BURJV3_RS16220 (BurJV3_3200)	pilR	3541146..3542519 (+)	1374	WP_014038262.1	sigma-54 dependent transcriptional regulator	Regulator
BURJV3_RS16225 (BurJV3_3201)	pilB	3542792..3544522 (-)	1731	WP_014038263.1	type IV-A pilus assembly ATPase PilB	Machinery gene
BURJV3_RS20975 (BurJV3_3202)	-	3544747..3545154 (-)	408	WP_014038264.1	pilin	-
BURJV3_RS16230 (BurJV3_3203)	pilA/pilAI	3545258..3545671 (-)	414	WP_014038265.1	pilin	Machinery gene
BURJV3_RS16235 (BurJV3_3204)	pilC	3546028..3547287 (+)	1260	WP_014038266.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49626.89 Da
• Isoelectric Point: 6.4421

>NTDB_id=42160 BURJV3_RS16220 WP_014038262.1 3541146..3542519(+) (pilR) [Stenotrophomonas maltophilia JV3]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIAVLRGLVKHALELNNTERPAPGPAAEQGARLLGDSPAMDVLRTTIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAANEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELKVPPLRERRQDLPE
LAASVLARLARSHGRPTPLLAPSALDALAQYAFPGNVRELENILERALALAEEDRIGADDLRLPQHAPRTPGSAAHAEAV
VDLQPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1374 bp

>NTDB_id=42160 BURJV3_RS16220 WP_014038262.1 3541146..3542519(+) (pilR) [Stenotrophomonas maltophilia JV3]
ATGAACGAAACCCGCAGCGCCCTCGTCGTCGACGATGAACGCGACATCCGCGAACTGCTGGTACTGACGCTCGGCCGCAT
GGGGCTGCGCATCAGTACGGCAGCCAACCTTGCCGAAGCGCGCGAACTGCTGGCCAGCAATCCGTACGACCTGTGCATCA
CCGACATGCGACTGCCGGACGGCAATGGCATCGAGCTGGTCAGCGAGATCGCCCAGCACTACCCGCGCACGCCGGTAGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCGCCGTGCTGCGCGGCCTGGTCAAGCATGCGCTGGAGCTCAACAACACCGAACGCCCCGCGCCCGGCCCCGCCG
CCGAACAGGGCGCGCGCCTGCTTGGCGACTCGCCGGCCATGGACGTGCTGCGCACCACCATCGGCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCCTCGGTGAATCCGGCGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGCCCAGGGCGCCCG
CGCAGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGGCGAGCTGATGGAGAGCGAATTCTTCGGCCACCGCA
AGGGTAGCTTCAGCGGCGCCCACGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCATGGCGGCACCCTGTTCCTCGACGAA
GTGGCCGAACTGCCACTGCAGATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCGCGGTCGGCGCCGC
CAACGAGGAGCCGGTGGACGTACGCATCCTCTCGGCCACCCACAAGGACCTGGCCGAGCTGGTCGAGGACGGGCGTTTCC
GCCACGACCTCTACTACCGCATCAACGTGATCGAACTGAAGGTGCCGCCGCTGCGCGAGCGTCGCCAGGACCTGCCGGAA
CTGGCCGCGTCGGTGCTGGCACGGCTGGCCCGCAGCCACGGCCGCCCGACGCCGCTGCTGGCACCGTCGGCACTGGACGC
GCTGGCCCAGTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTGGAACGTGCGCTGGCCCTGGCCGAAGAAG
ACCGCATCGGCGCCGACGACCTGCGCCTGCCGCAGCATGCCCCGCGCACGCCCGGCAGCGCAGCACATGCCGAAGCCGTG
GTGGACCTGCAGCCCGGCAGCGCCGCCCTGCCCTCGTACATCGAACAGCTCGAGCGCAGCGCCATCCAGCGCGCGCTGGA
AGAGAACCGCTGGAACAAGACCCGCACCGCCGCGCAGCTGGGCATCACCTTCCGCGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (414-454)

• Sigma-54 interaction domain (Sigma54_activat) (141-306)

• Response regulator receiver domain (Response_reg) (8-115)

3D structure

• AlphaFold DB: A0A397NJ72

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.719	99.781	0.626
pilR	Acinetobacter baumannii strain A118	48.38	100	0.49