Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   SPPN_RS09575 Genome accession   NC_015875
Coordinates   1842841..1843236 (-) Length   131 a.a.
NCBI ID   WP_000282467.1    Uniprot ID   A0A098Z0L0
Organism   Streptococcus pseudopneumoniae IS7493     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1837841..1848236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPPN_RS09555 (SPPN_09685) - 1838499..1839272 (-) 774 WP_000566045.1 class I SAM-dependent methyltransferase -
  SPPN_RS09560 - 1839719..1840474 (-) 756 Protein_1919 epoxyqueuosine reductase QueH -
  SPPN_RS13010 - 1840502..1840633 (-) 132 Protein_1920 IS630 family transposase -
  SPPN_RS09565 (SPPN_09705) groL 1840763..1842385 (-) 1623 WP_000031576.1 chaperonin GroEL -
  SPPN_RS09570 (SPPN_09710) groES 1842401..1842685 (-) 285 WP_000917330.1 co-chaperone GroES -
  SPPN_RS09575 (SPPN_09715) ssbB/cilA 1842841..1843236 (-) 396 WP_000282467.1 single-stranded DNA-binding protein Machinery gene
  SPPN_RS09580 (SPPN_09720) - 1843313..1844074 (-) 762 WP_001107792.1 SDR family NAD(P)-dependent oxidoreductase -
  SPPN_RS09585 (SPPN_09725) ytpR 1844116..1844742 (-) 627 WP_000578305.1 YtpR family tRNA-binding protein -
  SPPN_RS09590 (SPPN_09730) - 1844758..1845075 (-) 318 WP_000615773.1 thioredoxin family protein -
  SPPN_RS09595 (SPPN_09735) - 1845072..1845371 (-) 300 WP_001013973.1 DUF4651 domain-containing protein -
  SPPN_RS12375 (SPPN_09740) - 1845609..1845806 (-) 198 Protein_1928 N-acetylmuramoyl-L-alanine amidase family protein -
  SPPN_RS09610 (SPPN_09745) - 1846048..1846722 (-) 675 WP_000725711.1 LiaF transmembrane domain-containing protein -
  SPPN_RS09615 (SPPN_09750) - 1846727..1847173 (-) 447 WP_000776605.1 LytTR family DNA-binding domain-containing protein -
  SPPN_RS09620 (SPPN_09755) - 1847393..1847896 (-) 504 WP_000800914.1 phosphatase PAP2 family protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14925.89 Da        Isoelectric Point: 5.9409

>NTDB_id=42019 SPPN_RS09575 WP_000282467.1 1842841..1843236(-) (ssbB/cilA) [Streptococcus pseudopneumoniae IS7493]
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=42019 SPPN_RS09575 WP_000282467.1 1842841..1843236(-) (ssbB/cilA) [Streptococcus pseudopneumoniae IS7493]
ATGTATAATAAAGTTATCATGATTGGACGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCAGTAGC
GCGAGCGACTATTGCAGTCAACCGTCGTTACAAAGACCAAAACGGGGAACGTGAAGCTGATTTTGTTAATATGGTTCTAT
GGGGCAGACTAGCAGAAACCTTGGCAAGCTATGCAACCAAAGGTAGTCTTATTTCTGTGGATGGAGAATTGCGTACCCGT
CGCTTTGAGAAAAATGGTCAAATGAACTATGTGACTGAAGTACTTGTTACTGGATTCCAACTCTTGGAAAGTCGTGCTCA
ACGTGCCATGCGTGAAAATAATGCAGGTCAAGACTTGGCAGACCTAGTCTTGGAAGAGGAAGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A098Z0L0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae D39

100

100

1
  ssbB/cilA Streptococcus pneumoniae Rx1

100

100

1
  ssbB/cilA Streptococcus pneumoniae R6

100

100

1
  ssbB/cilA Streptococcus pneumoniae TIGR4

99.237

100

0.992
  ssbB/cilA Streptococcus mitis SK321

98.473

100

0.985
  ssbB/cilA Streptococcus mitis NCTC 12261

98.473

100

0.985
  ssbA Streptococcus mutans UA159

74.809

100

0.748
  ssbB Streptococcus sobrinus strain NIDR 6715-7

70.229

100

0.702
  ssbB Lactococcus lactis subsp. cremoris KW2

59.821

85.496

0.511
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405

Multiple sequence alignment