Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | GT972_RS13630 | Genome accession | NZ_CP048030 |
| Coordinates | 2846634..2847863 (+) | Length | 409 a.a. |
| NCBI ID | WP_162079093.1 | Uniprot ID | A0A6P1UD88 |
| Organism | Sinimarinibacterium sp. NLF-5-8 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2841634..2852863
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GT972_RS13620 (GT972_13620) | leuS | 2842121..2844721 (-) | 2601 | WP_162079608.1 | leucine--tRNA ligase | - |
| GT972_RS13625 (GT972_13625) | pilB | 2844841..2846586 (+) | 1746 | WP_202922454.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GT972_RS13630 (GT972_13630) | pilC | 2846634..2847863 (+) | 1230 | WP_162079093.1 | type II secretion system F family protein | Machinery gene |
| GT972_RS13635 (GT972_13635) | pilD | 2847879..2848748 (+) | 870 | WP_162079094.1 | A24 family peptidase | Machinery gene |
| GT972_RS15535 | - | 2849060..2849224 (-) | 165 | WP_238388271.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 409 a.a. Molecular weight: 44607.33 Da Isoelectric Point: 9.2779
>NTDB_id=419613 GT972_RS13630 WP_162079093.1 2846634..2847863(+) (pilC) [Sinimarinibacterium sp. NLF-5-8]
MATAEKIKTAREYIFKWEGVDRKGNKIKGQSPGPSDNFIKQQLRKQGISPTIVRKQSSLLGPRKKAVKAGDIAIFLRQMA
TMMSAGVPLVQSLEIVGRGHENPSVGELIMGIKTHIESGNSFSAGLAQFPLYFDDLVVNLVDAGEKSGTLETLLDKIATY
KEKTEAIKKKVKKALTYPTAVIIVAFIVTGILLYFVVPQFQDLFQGFGADLPAFTLMVIGLSEFVQDKWWLMALIIGGLG
YGFHEAKRRSQNFRRFLDRVLLKAPIVGAILYKSAIARYARTLSTMFAAGVPLVEALDPVAKAAGNIVFEEAINTMRDQV
ATGQQLNLTMETSGMFPNMATQMVAIGEESGALDAMCAKVADFYEEEVDNLVDSLSSLLEPLIMSVLGVLVGGLVVAMYL
PIFKLGQAI
MATAEKIKTAREYIFKWEGVDRKGNKIKGQSPGPSDNFIKQQLRKQGISPTIVRKQSSLLGPRKKAVKAGDIAIFLRQMA
TMMSAGVPLVQSLEIVGRGHENPSVGELIMGIKTHIESGNSFSAGLAQFPLYFDDLVVNLVDAGEKSGTLETLLDKIATY
KEKTEAIKKKVKKALTYPTAVIIVAFIVTGILLYFVVPQFQDLFQGFGADLPAFTLMVIGLSEFVQDKWWLMALIIGGLG
YGFHEAKRRSQNFRRFLDRVLLKAPIVGAILYKSAIARYARTLSTMFAAGVPLVEALDPVAKAAGNIVFEEAINTMRDQV
ATGQQLNLTMETSGMFPNMATQMVAIGEESGALDAMCAKVADFYEEEVDNLVDSLSSLLEPLIMSVLGVLVGGLVVAMYL
PIFKLGQAI
Nucleotide
Download Length: 1230 bp
>NTDB_id=419613 GT972_RS13630 WP_162079093.1 2846634..2847863(+) (pilC) [Sinimarinibacterium sp. NLF-5-8]
ATGGCCACTGCCGAAAAAATCAAAACGGCCAGGGAATACATCTTCAAATGGGAAGGTGTGGATCGAAAGGGCAATAAAAT
CAAAGGCCAGTCGCCGGGGCCTTCAGACAACTTCATCAAGCAGCAGCTGCGCAAGCAGGGGATTTCGCCCACCATCGTGC
GCAAGCAATCGAGTCTGCTGGGCCCCAGGAAAAAAGCGGTCAAAGCGGGCGACATCGCCATTTTTCTCAGACAGATGGCC
ACCATGATGAGCGCCGGCGTGCCGCTGGTGCAGTCGCTGGAGATCGTCGGGCGTGGCCACGAAAACCCCAGCGTCGGCGA
GCTGATCATGGGCATCAAGACGCACATCGAAAGTGGCAACTCGTTTTCTGCGGGACTTGCCCAGTTTCCACTGTATTTTG
ATGATCTGGTCGTCAATCTGGTGGATGCCGGCGAAAAGTCCGGCACCCTGGAAACCCTGCTCGACAAAATCGCCACCTAC
AAAGAAAAAACCGAGGCGATCAAGAAAAAGGTCAAAAAAGCGCTGACCTATCCCACCGCCGTGATCATCGTGGCGTTCAT
CGTCACCGGCATCCTGCTGTATTTCGTGGTGCCGCAATTCCAGGATCTGTTTCAGGGCTTTGGCGCCGATTTGCCGGCGT
TTACCCTGATGGTGATCGGCCTGTCCGAGTTTGTGCAGGACAAATGGTGGTTGATGGCGCTGATCATTGGCGGCCTCGGC
TACGGATTTCATGAGGCCAAGCGTCGAAGTCAGAACTTCAGGCGTTTTCTGGATCGTGTTTTGCTCAAGGCGCCGATTGT
CGGTGCGATTTTGTACAAATCGGCGATTGCGCGGTATGCACGCACGTTATCGACGATGTTTGCCGCAGGCGTTCCGCTGG
TCGAGGCGCTCGACCCTGTGGCCAAGGCGGCGGGCAACATTGTCTTTGAGGAAGCCATCAACACCATGCGCGACCAGGTT
GCCACCGGACAGCAGCTCAATCTCACCATGGAAACCTCCGGCATGTTTCCCAACATGGCGACGCAGATGGTCGCCATTGG
CGAAGAATCCGGGGCGCTGGATGCCATGTGTGCCAAGGTTGCCGACTTTTATGAAGAAGAAGTGGATAACCTCGTCGATT
CGCTGTCGAGCCTGCTGGAGCCGCTGATCATGTCGGTGCTCGGGGTGTTGGTGGGCGGCCTCGTTGTTGCCATGTATCTG
CCGATCTTCAAACTCGGCCAAGCCATCTGA
ATGGCCACTGCCGAAAAAATCAAAACGGCCAGGGAATACATCTTCAAATGGGAAGGTGTGGATCGAAAGGGCAATAAAAT
CAAAGGCCAGTCGCCGGGGCCTTCAGACAACTTCATCAAGCAGCAGCTGCGCAAGCAGGGGATTTCGCCCACCATCGTGC
GCAAGCAATCGAGTCTGCTGGGCCCCAGGAAAAAAGCGGTCAAAGCGGGCGACATCGCCATTTTTCTCAGACAGATGGCC
ACCATGATGAGCGCCGGCGTGCCGCTGGTGCAGTCGCTGGAGATCGTCGGGCGTGGCCACGAAAACCCCAGCGTCGGCGA
GCTGATCATGGGCATCAAGACGCACATCGAAAGTGGCAACTCGTTTTCTGCGGGACTTGCCCAGTTTCCACTGTATTTTG
ATGATCTGGTCGTCAATCTGGTGGATGCCGGCGAAAAGTCCGGCACCCTGGAAACCCTGCTCGACAAAATCGCCACCTAC
AAAGAAAAAACCGAGGCGATCAAGAAAAAGGTCAAAAAAGCGCTGACCTATCCCACCGCCGTGATCATCGTGGCGTTCAT
CGTCACCGGCATCCTGCTGTATTTCGTGGTGCCGCAATTCCAGGATCTGTTTCAGGGCTTTGGCGCCGATTTGCCGGCGT
TTACCCTGATGGTGATCGGCCTGTCCGAGTTTGTGCAGGACAAATGGTGGTTGATGGCGCTGATCATTGGCGGCCTCGGC
TACGGATTTCATGAGGCCAAGCGTCGAAGTCAGAACTTCAGGCGTTTTCTGGATCGTGTTTTGCTCAAGGCGCCGATTGT
CGGTGCGATTTTGTACAAATCGGCGATTGCGCGGTATGCACGCACGTTATCGACGATGTTTGCCGCAGGCGTTCCGCTGG
TCGAGGCGCTCGACCCTGTGGCCAAGGCGGCGGGCAACATTGTCTTTGAGGAAGCCATCAACACCATGCGCGACCAGGTT
GCCACCGGACAGCAGCTCAATCTCACCATGGAAACCTCCGGCATGTTTCCCAACATGGCGACGCAGATGGTCGCCATTGG
CGAAGAATCCGGGGCGCTGGATGCCATGTGTGCCAAGGTTGCCGACTTTTATGAAGAAGAAGTGGATAACCTCGTCGATT
CGCTGTCGAGCCTGCTGGAGCCGCTGATCATGTCGGTGCTCGGGGTGTTGGTGGGCGGCCTCGTTGTTGCCATGTATCTG
CCGATCTTCAAACTCGGCCAAGCCATCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
59.701 |
98.289 |
0.587 |
| pilC | Legionella pneumophila strain ERS1305867 |
56.313 |
96.822 |
0.545 |
| pilC | Acinetobacter baumannii D1279779 |
55.416 |
97.066 |
0.538 |
| pilC | Acinetobacter baylyi ADP1 |
54.774 |
97.311 |
0.533 |
| pilG | Neisseria gonorrhoeae MS11 |
45.137 |
98.044 |
0.443 |
| pilG | Neisseria meningitidis 44/76-A |
45.137 |
98.044 |
0.443 |
| pilC | Vibrio cholerae strain A1552 |
42.857 |
95.844 |
0.411 |
| pilC | Vibrio campbellii strain DS40M4 |
41.071 |
95.844 |
0.394 |
| pilC | Thermus thermophilus HB27 |
37.343 |
97.555 |
0.364 |