Detailed information NTG0419614

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GT972_RS13635
• Genome accession: NZ_CP048030
• Coordinates: 2847879..2848748 (+)
• Length: 289 a.a.
• NCBI ID: WP_162079094.1
• Uniprot ID: -
• Organism: Sinimarinibacterium sp. NLF-5-8
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2842879..2853748

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GT972_RS13625 (GT972_13625)	pilB	2844841..2846586 (+)	1746	WP_202922454.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GT972_RS13630 (GT972_13630)	pilC	2846634..2847863 (+)	1230	WP_162079093.1	type II secretion system F family protein	Machinery gene
GT972_RS13635 (GT972_13635)	pilD	2847879..2848748 (+)	870	WP_162079094.1	A24 family peptidase	Machinery gene
GT972_RS15535	-	2849060..2849224 (-)	165	WP_238388271.1	hypothetical protein	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31399.70 Da
• Isoelectric Point: 8.0549

>NTDB_id=419614 GT972_RS13635 WP_162079094.1 2847879..2848748(+) (pilD) [Sinimarinibacterium sp. NLF-5-8]
MTLIEALRASPALLTLATAVLGLIVGSFLNVLILRLPQMMARAWQREARALLELDEVEQPALSLTQPASACPQCHAPIKP
WHNIPVLSWLWLRGRCAHCRARISIQYPLVELASAGLSAVCAQHFGWGVPLAAALVLTWTLLALAVIDLHTTLLPDDLTL
PLLWLGLALALLPVFAPLQDAVIGAMAGYLMLWAVFWLFKLITGKEGMGYGDFKLLAALGAWLGWQALPMVILLSSLVGA
VVGIGMVVFLRHDRRVPIPFGPYLAAAGWLALLYGDVLQNWYLARIGIG

Nucleotide

• Length: 870 bp

>NTDB_id=419614 GT972_RS13635 WP_162079094.1 2847879..2848748(+) (pilD) [Sinimarinibacterium sp. NLF-5-8]
ATGACCCTGATCGAAGCGCTGCGCGCCAGCCCCGCACTGTTGACCCTCGCCACCGCCGTGCTGGGGCTGATCGTCGGCAG
TTTTTTGAATGTGCTGATTCTGCGGCTGCCACAGATGATGGCGCGAGCGTGGCAACGTGAAGCGCGCGCGCTGCTGGAGC
TGGATGAAGTTGAGCAGCCCGCGCTGTCATTGACCCAACCGGCGTCTGCCTGTCCGCAGTGCCATGCGCCCATCAAGCCC
TGGCACAACATCCCGGTTTTGAGCTGGCTGTGGCTGCGCGGGCGCTGCGCACATTGCCGCGCGCGCATTTCCATTCAATA
CCCCCTGGTGGAGCTGGCCTCGGCAGGGTTATCCGCAGTGTGTGCGCAGCACTTCGGCTGGGGCGTGCCGTTGGCCGCAG
CCCTGGTGTTGACGTGGACGTTGCTGGCGCTGGCGGTCATCGACCTGCACACCACCCTGCTTCCCGATGATCTGACCCTG
CCCTTGCTGTGGCTGGGACTGGCGCTGGCGCTGCTGCCGGTGTTTGCGCCGTTGCAGGACGCGGTGATCGGCGCAATGGC
CGGTTATCTGATGCTGTGGGCTGTGTTCTGGCTGTTCAAGCTGATCACCGGCAAAGAAGGCATGGGCTACGGCGATTTCA
AACTGCTGGCGGCGCTCGGCGCCTGGCTGGGCTGGCAGGCATTGCCGATGGTGATCTTGTTGTCGTCGCTGGTCGGCGCC
GTGGTGGGCATCGGCATGGTGGTGTTTTTGCGCCATGACCGCCGCGTGCCGATTCCATTCGGGCCTTATCTGGCTGCCGC
GGGCTGGCTGGCGCTGTTGTATGGCGATGTGCTGCAGAACTGGTATCTGGCACGCATCGGTATCGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.861	99.654	0.547
pilD	Vibrio campbellii strain DS40M4	52.098	98.962	0.516
pilD	Acinetobacter nosocomialis M2	50.183	94.464	0.474
pilD	Acinetobacter baumannii D1279779	50.183	94.464	0.474
pilD	Neisseria gonorrhoeae MS11	48.043	97.232	0.467