Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   CFU_RS20425 Genome accession   NC_015856
Coordinates   4606131..4607363 (+) Length   410 a.a.
NCBI ID   WP_014007898.1    Uniprot ID   G0ADX3
Organism   Collimonas fungivorans Ter331     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4601131..4612363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFU_RS20405 (CFU_3920) ispB 4601816..4602766 (+) 951 WP_085959179.1 octaprenyl diphosphate synthase -
  CFU_RS20415 (CFU_3921) - 4602977..4604266 (+) 1290 WP_014007896.1 HlyC/CorC family transporter -
  CFU_RS20420 (CFU_3922) pilB 4604390..4606114 (+) 1725 WP_014007897.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CFU_RS20425 (CFU_3923) pilG 4606131..4607363 (+) 1233 WP_014007898.1 type II secretion system F family protein Machinery gene
  CFU_RS20430 (CFU_3924) pilD 4607363..4608229 (+) 867 WP_014007899.1 A24 family peptidase Machinery gene
  CFU_RS20435 (CFU_3925) coaE 4608236..4608889 (+) 654 WP_014007900.1 dephospho-CoA kinase -
  CFU_RS20440 (CFU_3926) zapD 4609020..4609775 (+) 756 WP_014007901.1 cell division protein ZapD -
  CFU_RS20445 (CFU_3927) yacG 4609797..4609985 (+) 189 WP_014007902.1 DNA gyrase inhibitor YacG -
  CFU_RS20450 (CFU_3928) mutT 4610005..4610418 (-) 414 WP_041742552.1 8-oxo-dGTP diphosphatase MutT -
  CFU_RS20455 (CFU_3929) - 4610415..4611290 (-) 876 WP_041742554.1 ATP-binding protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44776.76 Da        Isoelectric Point: 10.1422

>NTDB_id=41950 CFU_RS20425 WP_014007898.1 4606131..4607363(+) (pilG) [Collimonas fungivorans Ter331]
MATAARSAASARQVKEWVYLWEGKDKKGKVVRGELRAGSETVVNVTMRRQGILVTKVKKKTFRSGKKISDKDISLFTRQL
ATMMKAGVPLLQSFDIVAKGHANPSVSKLVNDIRGDVETGTSLSQAFRKFPLYFDPLFCNLVGAGEQAGILEDLLERLAI
YKEKTLAIKGKIKSALFYPVSILAVAFVVTAVIMIWVVPAFKQVFSSFGADLPAPTMFVMSISDFMVGNWYIIFPTIFAG
LYLFFQSWRRSLKMQRVMDRLLLKAPIFGDVIRKATIARWTRTLATMFAAGVPLVESLDSVGGASGNAVYLDATKKIQSE
VSTGTSLTAAMENANVFPNMVTQMVSIGEESGSLDQMLGKVADFYEAEVDDAVASLSSLMEPLIMVILGVLIGGLVVAMY
LPIFKLGSVV

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=41950 CFU_RS20425 WP_014007898.1 4606131..4607363(+) (pilG) [Collimonas fungivorans Ter331]
ATGGCAACTGCCGCACGCAGCGCCGCAAGCGCACGTCAGGTCAAGGAGTGGGTGTATCTCTGGGAGGGCAAGGATAAAAA
GGGCAAAGTAGTGCGCGGTGAACTGCGCGCCGGCAGCGAGACCGTGGTCAACGTCACCATGCGGCGCCAGGGAATCCTGG
TCACCAAGGTTAAAAAGAAGACCTTCCGCAGCGGGAAGAAAATTTCCGACAAGGATATTTCCTTGTTTACCCGCCAGCTG
GCCACCATGATGAAGGCCGGCGTGCCGCTGCTGCAGTCTTTTGATATCGTGGCCAAGGGGCATGCCAATCCGTCGGTGTC
GAAACTGGTCAATGATATCCGCGGCGATGTGGAGACCGGCACCAGTCTGAGCCAGGCGTTCCGCAAGTTTCCGCTGTATT
TCGACCCGTTGTTCTGCAACCTGGTTGGTGCTGGCGAACAGGCGGGTATTCTTGAAGACTTGCTGGAACGCCTGGCAATC
TATAAAGAAAAGACTCTCGCGATCAAAGGTAAAATCAAATCTGCTTTGTTCTACCCTGTATCGATTTTGGCAGTAGCATT
TGTCGTCACTGCGGTCATCATGATTTGGGTGGTACCCGCTTTCAAGCAGGTGTTTTCCAGCTTTGGCGCGGACTTGCCTG
CGCCCACCATGTTTGTGATGTCAATATCGGACTTTATGGTCGGTAACTGGTACATTATCTTCCCCACCATATTTGCCGGC
TTGTATTTGTTCTTCCAGTCCTGGAGACGTTCGCTCAAAATGCAGCGCGTCATGGATCGCTTGCTGCTGAAAGCGCCGAT
TTTCGGCGATGTGATACGCAAAGCAACGATAGCGCGCTGGACCCGCACTTTGGCCACCATGTTTGCCGCCGGCGTGCCAT
TAGTCGAGTCGCTTGACTCGGTGGGTGGCGCATCCGGCAACGCGGTCTACCTGGACGCCACCAAGAAGATCCAAAGCGAA
GTCAGCACCGGCACCAGCTTGACCGCAGCCATGGAAAACGCCAATGTATTCCCGAATATGGTGACGCAAATGGTTTCGAT
CGGCGAAGAGTCCGGCTCACTGGATCAAATGCTGGGTAAAGTAGCCGACTTCTACGAGGCTGAAGTGGATGATGCGGTAG
CCTCCCTGTCCAGCCTGATGGAACCCTTGATCATGGTGATCCTCGGCGTGCTGATCGGCGGCCTGGTGGTTGCCATGTAC
CTGCCAATCTTCAAGTTGGGCTCGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(280-402)

Type II secretion system (T2SS), protein F (T2SSF)

(76-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G0ADX3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

53.518

97.073

0.52
  pilC Pseudomonas stutzeri DSM 10701

52.985

98.049

0.52
  pilG Neisseria meningitidis 44/76-A

53.266

97.073

0.517
  pilC Acinetobacter baumannii D1279779

52.897

96.829

0.512
  pilC Legionella pneumophila strain ERS1305867

52.778

96.585

0.51
  pilC Acinetobacter baylyi ADP1

52.261

97.073

0.507
  pilC Vibrio campbellii strain DS40M4

40.741

98.78

0.402
  pilC Vibrio cholerae strain A1552

41.058

96.829

0.398
  pilC Thermus thermophilus HB27

36.386

100

0.368

Multiple sequence alignment