Detailed information NTG0041951

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CFU_RS20430
• Genome accession: NC_015856
• Coordinates: 4607363..4608229 (+)
• Length: 288 a.a.
• NCBI ID: WP_014007899.1
• Uniprot ID: G0ADX4
• Organism: Collimonas fungivorans Ter331
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4602363..4613229

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CFU_RS20415 (CFU_3921)	-	4602977..4604266 (+)	1290	WP_014007896.1	HlyC/CorC family transporter	-
CFU_RS20420 (CFU_3922)	pilB	4604390..4606114 (+)	1725	WP_014007897.1	type IV-A pilus assembly ATPase PilB	Machinery gene
CFU_RS20425 (CFU_3923)	pilG	4606131..4607363 (+)	1233	WP_014007898.1	type II secretion system F family protein	Machinery gene
CFU_RS20430 (CFU_3924)	pilD	4607363..4608229 (+)	867	WP_014007899.1	A24 family peptidase	Machinery gene
CFU_RS20435 (CFU_3925)	coaE	4608236..4608889 (+)	654	WP_014007900.1	dephospho-CoA kinase	-
CFU_RS20440 (CFU_3926)	zapD	4609020..4609775 (+)	756	WP_014007901.1	cell division protein ZapD	-
CFU_RS20445 (CFU_3927)	yacG	4609797..4609985 (+)	189	WP_014007902.1	DNA gyrase inhibitor YacG	-
CFU_RS20450 (CFU_3928)	mutT	4610005..4610418 (-)	414	WP_041742552.1	8-oxo-dGTP diphosphatase MutT	-
CFU_RS20455 (CFU_3929)	-	4610415..4611290 (-)	876	WP_041742554.1	ATP-binding protein	-
CFU_RS20460 (CFU_3930)	argJ	4611431..4612669 (-)	1239	WP_014007905.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31202.26 Da
• Isoelectric Point: 8.1206

>NTDB_id=41951 CFU_RS20430 WP_014007899.1 4607363..4608229(+) (pilD) [Collimonas fungivorans Ter331]
MQDGIFFLAAGSLLPTVLAAVFGLLIGSFLNVVIHRLPIMMQRESDNYVAHESGKPLPHTERYNLVVPRSACTQCKHQIG
ALENVPILSYLALRGKCAACKTPISIRYPLVEALTGALSALLIWHFGSGWVGLATLVLLYLLIAMTFIDADTQLLPDDLT
LPLLWIGLLLNLSGLFVPLQDAVIGAAAGYLSLWAIYWAFKLLTGKEGMGYGDFKLLAALGAWLGWKMLPIIILFSSLVG
AVVGIILIVFARRGRDKPIPFGPYLAAAGLLALLYGQTILETYFGFAT

Nucleotide

• Length: 867 bp

>NTDB_id=41951 CFU_RS20430 WP_014007899.1 4607363..4608229(+) (pilD) [Collimonas fungivorans Ter331]
ATGCAAGACGGGATTTTTTTCCTGGCGGCGGGGAGCCTGCTTCCCACCGTCCTGGCAGCTGTTTTTGGATTGTTGATCGG
CAGTTTCCTGAATGTGGTGATTCACAGGCTGCCGATCATGATGCAGCGCGAATCGGATAATTACGTCGCCCACGAAAGCG
GCAAGCCGCTGCCGCACACCGAGCGCTACAACCTGGTGGTGCCGCGCTCGGCCTGCACCCAATGCAAACACCAGATCGGC
GCGCTGGAGAACGTGCCTATACTGAGCTACCTGGCCTTGCGCGGCAAATGCGCAGCATGCAAAACCCCCATCTCGATACG
CTATCCCCTGGTCGAAGCATTGACCGGAGCGCTGTCGGCCCTGCTCATCTGGCACTTCGGCAGCGGCTGGGTCGGCCTGG
CGACCCTGGTCTTGCTCTATCTGCTGATCGCGATGACGTTTATCGACGCCGATACCCAATTGCTGCCGGACGACCTGACC
TTGCCGCTGCTCTGGATTGGCCTGCTGCTGAACCTGTCCGGCCTGTTCGTACCCCTGCAAGACGCCGTGATCGGCGCCGC
GGCCGGCTACCTGAGCCTGTGGGCGATCTACTGGGCCTTCAAACTGCTGACCGGCAAGGAAGGCATGGGGTACGGCGATT
TCAAGCTGCTGGCGGCGCTCGGCGCCTGGCTGGGCTGGAAGATGCTACCCATCATCATCCTGTTTTCATCGTTGGTAGGC
GCGGTAGTCGGGATCATACTGATCGTTTTTGCCCGCCGCGGCCGCGACAAACCCATCCCCTTCGGCCCTTACCTGGCCGC
CGCCGGCCTGCTGGCCCTGCTCTACGGCCAAACAATTCTGGAAACTTATTTCGGTTTTGCTACCTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

3D structure

• AlphaFold DB: G0ADX4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	56.458	94.097	0.531
pilD	Vibrio campbellii strain DS40M4	54.779	94.444	0.517
pilD	Neisseria gonorrhoeae MS11	54.724	88.194	0.483
pilD	Acinetobacter baumannii D1279779	47.038	99.653	0.469
pilD	Acinetobacter nosocomialis M2	46.69	99.653	0.465