Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GVU25_RS01430 Genome accession   NZ_CP048014
Coordinates   315301..316527 (-) Length   408 a.a.
NCBI ID   WP_004975864.1    Uniprot ID   A0A2A5PJ18
Organism   Acinetobacter towneri strain 205     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 310301..321527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GVU25_RS01405 (GVU25_01400) - 311592..311915 (+) 324 WP_004975854.1 pyrimidine/purine nucleoside phosphorylase -
  GVU25_RS01410 (GVU25_01405) rlmB 312104..312853 (+) 750 WP_004975856.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  GVU25_RS01415 (GVU25_01410) - 312948..313826 (+) 879 WP_042068576.1 DMT family transporter -
  GVU25_RS01420 (GVU25_01415) coaE 313832..314431 (-) 600 WP_004975860.1 dephospho-CoA kinase -
  GVU25_RS13845 (GVU25_01420) pilD 314441..315301 (-) 861 WP_096901344.1 prepilin peptidase Machinery gene
  GVU25_RS01430 (GVU25_01425) pilC 315301..316527 (-) 1227 WP_004975864.1 type II secretion system F family protein Machinery gene
  GVU25_RS01435 (GVU25_01430) pilB 316558..318270 (-) 1713 WP_004975865.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GVU25_RS01440 (GVU25_01435) tpiA 318548..319339 (+) 792 WP_004975867.1 triose-phosphate isomerase -
  GVU25_RS01445 (GVU25_01440) secG 319353..319682 (+) 330 WP_004975868.1 preprotein translocase subunit SecG -
  GVU25_RS01470 (GVU25_01465) rimP 320634..321158 (+) 525 WP_004975871.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44996.52 Da        Isoelectric Point: 9.9487

>NTDB_id=419428 GVU25_RS01430 WP_004975864.1 315301..316527(-) (pilC) [Acinetobacter towneri strain 205]
MAVKKAQMMPTFVYEGIDRKGAKLKGEIPARNMALAKVTLRKQGITIKTIRQKKKNILEGLMKKRVSTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFEELFSSFGADLPAFTKMVVNMSQWMQKYWFILIIVIGVIIA
GFLETKKRSKKFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIRDDVA
TGQQLQFAMRVTNKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMSVLGILVGGLVVAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=419428 GVU25_RS01430 WP_004975864.1 315301..316527(-) (pilC) [Acinetobacter towneri strain 205]
ATGGCTGTCAAAAAAGCACAGATGATGCCCACCTTCGTTTATGAAGGGATTGACCGCAAAGGGGCTAAGTTAAAAGGGGA
AATTCCAGCGCGTAATATGGCCTTGGCAAAGGTTACATTGCGTAAACAAGGGATTACCATCAAGACGATTCGCCAAAAGA
AAAAGAATATTCTTGAAGGCTTAATGAAAAAACGGGTGTCGACCTTAGACATCACTATTTTCACGCGTCAGCTTGCCACT
ATGATGAAAGCAGGTGTGCCTTTGGTACAAAGCTTTGAGATTGTTGCCGAAGGTCTTGAAAACCCCGCCATGCGTGAAGT
GGTTTTAGGCATTAAAGGTGAAGTGGAAGGCGGGAATACCTTTGCTGGCGCATTGCGTAAATATCCTCAATATTTTGACA
ACCTATTTTGTTCTTTGGTCGAATCTGGTGAACAATCGGGTGCCCTAGAAACCATGCTAGATCGTGTCGCGATCTATAAA
GAAAAGAGTGAGTTACTCAAACAAAAAATTAAAAAAGCCATGAAATACCCTGCAACGGTCATTGTGGTGGCCGTGATTGT
GACCATTATTTTGATGGTGAAAGTCGTACCTGTGTTTGAAGAGTTGTTTAGCTCTTTTGGTGCGGACTTGCCTGCCTTCA
CTAAAATGGTGGTGAACATGTCACAATGGATGCAGAAATACTGGTTTATTCTGATTATTGTGATTGGGGTCATCATTGCA
GGTTTCTTGGAAACTAAAAAACGCAGTAAAAAATTCCGTGACTTCTTAGACAAAGCGGCACTGAAAGCGCCTATTTTTGG
TGACTTGGTCTATAAAGCCATTATCGCGCGTTATAGCCGTACTTTAGCCACTACTTTTGCTGCTGGTGTACCCTTAATTG
ATGCCTTGGAATCTACCGCTGGGGCAACCAATAATGTGGTCTATGAAGAAGCCGTGATGAAAATTCGTGATGATGTTGCG
ACAGGTCAACAGCTACAATTCGCCATGCGTGTCACCAATAAATTCCCGTCTATGGCAGTGCAAATGGTAGCCATTGGTGA
AGAATCAGGTGCGCTAGATGCCATGCTAGATAAAGTCGCAACCCACTATGAAAACGAAGTCGACAACGCAGTAGATGGCT
TAACCTCAATGATGGAGCCGTTGATTATGTCTGTCTTGGGTATTTTAGTGGGTGGTTTAGTTGTCGCCATGTACCTTCCA
ATCTTCCAAATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A5PJ18

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

87.99

100

0.88
  pilC Acinetobacter baylyi ADP1

83.578

100

0.836
  pilC Pseudomonas stutzeri DSM 10701

59.606

99.51

0.593
  pilC Legionella pneumophila strain ERS1305867

53.333

99.265

0.529
  pilG Neisseria gonorrhoeae MS11

47.236

97.549

0.461
  pilG Neisseria meningitidis 44/76-A

46.985

97.549

0.458
  pilC Vibrio cholerae strain A1552

43.627

100

0.436
  pilC Vibrio campbellii strain DS40M4

42.079

99.02

0.417
  pilC Thermus thermophilus HB27

36.79

99.265

0.365

Multiple sequence alignment