Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GWG05_RS02165 Genome accession   NZ_CP047982
Coordinates   438322..439563 (-) Length   413 a.a.
NCBI ID   WP_180907144.1    Uniprot ID   -
Organism   Aeromonas caviae strain 1507-17068     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 433322..444563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWG05_RS02135 (GWG05_02140) - 434118..435302 (+) 1185 WP_049637195.1 tetratricopeptide repeat protein -
  GWG05_RS02140 (GWG05_02145) mutT 435311..435715 (+) 405 WP_171864957.1 8-oxo-dGTP diphosphatase MutT -
  GWG05_RS02145 (GWG05_02150) yacG 435771..435965 (-) 195 WP_039040499.1 DNA gyrase inhibitor YacG -
  GWG05_RS02150 (GWG05_02155) zapD 435976..436698 (-) 723 WP_043154103.1 cell division protein ZapD -
  GWG05_RS02155 (GWG05_02160) coaE 436736..437350 (-) 615 WP_049637196.1 dephospho-CoA kinase -
  GWG05_RS02160 (GWG05_02165) pilD 437369..438244 (-) 876 WP_053288093.1 prepilin peptidase Machinery gene
  GWG05_RS02165 (GWG05_02170) pilC 438322..439563 (-) 1242 WP_180907144.1 type II secretion system F family protein Machinery gene
  GWG05_RS02170 (GWG05_02175) pilB 439691..441397 (-) 1707 WP_042077628.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  GWG05_RS02175 (GWG05_02180) - 441401..441841 (-) 441 WP_180907305.1 pilin -
  GWG05_RS02180 (GWG05_02185) nadC 442166..443029 (-) 864 WP_180907145.1 carboxylating nicotinate-nucleotide diphosphorylase -
  GWG05_RS02185 (GWG05_02190) - 443033..443503 (-) 471 WP_180907146.1 TIGR02281 family clan AA aspartic protease -
  GWG05_RS02190 (GWG05_02195) ampD 443616..444185 (+) 570 WP_180907147.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45417.26 Da        Isoelectric Point: 9.7471

>NTDB_id=418966 GWG05_RS02165 WP_180907144.1 438322..439563(-) (pilC) [Aeromonas caviae strain 1507-17068]
MATLAQKQNAPKKVFSFRWHGFNRKGQKVSGELQADSINTVKAELRKQGVNVTKVSKQGQGLFSKGGARIKPMDIAVISR
QITTMLSAGVPLVQSLQIIARGHEKAAVRELIGQIAADVETGTPLSEALHRHPRYFDDLYCDLVEAGEQSGALETIYDRI
ATYREKNEALKSKIKKAMFYPSMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPAFTRFVIAISRFMQEWWYAIFGGAA
LAVFLYVRAWRKSQKVRDNTDKFILTIPVVGNILHKAAMARFARTLSTTFSAGIPLVDALVSAAGASGNYVYRTATMAIR
NEVVAGMQINVAMRTVDLFPDMVTQMVMIGEESGAIDDMLSKVAAIFEQEVDDMVDGLTSLLEPIIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=418966 GWG05_RS02165 WP_180907144.1 438322..439563(-) (pilC) [Aeromonas caviae strain 1507-17068]
ATGGCTACATTAGCTCAAAAACAGAACGCACCAAAAAAGGTCTTCTCCTTCCGCTGGCACGGGTTCAATCGCAAGGGACA
GAAGGTGTCAGGCGAGTTGCAGGCCGACAGCATCAATACCGTCAAGGCGGAACTGCGCAAGCAGGGCGTCAATGTCACCA
AGGTCAGCAAGCAGGGACAGGGGCTGTTCTCCAAGGGCGGCGCCCGGATCAAGCCGATGGACATCGCCGTCATCTCCCGC
CAGATCACCACCATGCTCTCCGCCGGCGTACCCCTGGTACAGAGCCTGCAGATCATCGCACGCGGCCATGAAAAGGCGGC
GGTGCGCGAACTGATCGGCCAGATCGCCGCCGATGTGGAGACAGGCACCCCGCTGTCCGAGGCGTTGCACCGTCACCCCC
GTTACTTCGACGATCTCTATTGCGACTTGGTCGAGGCCGGGGAGCAGTCCGGCGCACTGGAAACCATCTACGACCGGATT
GCCACCTATCGCGAGAAGAACGAGGCCCTCAAATCCAAGATCAAGAAGGCCATGTTCTATCCGTCCATGGTCATTCTGGT
GGCCATCGTCGTCACCTCCATCCTGCTGCTCTTCGTCATTCCCCAGTTCGAGGATATCTTCAAGAGCTTCGGTGCCGAGC
TGCCCGCCTTTACCCGGTTCGTCATCGCCATCTCCCGCTTCATGCAGGAGTGGTGGTACGCCATCTTTGGCGGCGCGGCT
CTCGCCGTCTTCCTCTATGTGCGGGCCTGGCGAAAATCCCAGAAGGTCAGGGACAACACGGACAAGTTCATCCTCACCAT
TCCCGTGGTGGGCAACATACTGCACAAGGCGGCCATGGCCCGTTTTGCCCGCACCCTCTCCACCACCTTCTCCGCCGGTA
TCCCACTGGTGGATGCCCTGGTCTCGGCGGCCGGAGCATCGGGCAACTATGTCTATCGCACTGCGACCATGGCCATTCGC
AACGAGGTGGTGGCCGGCATGCAGATCAACGTCGCCATGCGCACCGTGGATCTTTTCCCCGACATGGTGACCCAGATGGT
GATGATCGGTGAGGAATCCGGCGCCATCGACGACATGCTCTCCAAGGTCGCCGCCATTTTCGAACAGGAGGTGGACGACA
TGGTCGACGGCCTCACCAGCCTGCTCGAACCCATCATCATGGTGGTGCTCGGGGTGCTGGTCGGCGGCATGGTCGTGGCC
ATGTACCTCCCCATTTTCAAGCTGGGCTCTGTGATACACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.818

95.884

0.545
  pilC Legionella pneumophila strain ERS1305867

52.84

98.063

0.518
  pilC Acinetobacter baumannii D1279779

51.372

97.094

0.499
  pilC Acinetobacter baylyi ADP1

51.128

96.61

0.494
  pilC Vibrio cholerae strain A1552

46.929

98.547

0.462
  pilC Vibrio campbellii strain DS40M4

44.862

96.61

0.433
  pilG Neisseria meningitidis 44/76-A

40.05

97.337

0.39
  pilG Neisseria gonorrhoeae MS11

40.05

97.337

0.39
  pilC Thermus thermophilus HB27

38.75

96.852

0.375

Multiple sequence alignment