Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   IBC08_RS05335 Genome accession   NZ_CP061019
Coordinates   1020941..1021423 (-) Length   160 a.a.
NCBI ID   WP_082308976.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 24853     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1015941..1026423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBC08_RS05315 (IBC08_05305) pepT 1016422..1017645 (-) 1224 WP_014608366.1 peptidase T -
  IBC08_RS05320 (IBC08_05310) lepB 1017853..1018410 (-) 558 WP_011681191.1 signal peptidase I -
  IBC08_RS05325 (IBC08_05315) - 1018533..1019762 (-) 1230 WP_002953086.1 tetratricopeptide repeat protein -
  IBC08_RS05330 (IBC08_05320) - 1019752..1020930 (-) 1179 WP_207559802.1 AI-2E family transporter -
  IBC08_RS05335 (IBC08_05325) mutX 1020941..1021423 (-) 483 WP_082308976.1 8-oxo-dGTP diphosphatase Machinery gene
  IBC08_RS05340 (IBC08_05330) ftsX 1021579..1022508 (-) 930 WP_084829635.1 permease-like cell division protein FtsX -
  IBC08_RS05345 (IBC08_05335) ftsE 1022501..1023193 (-) 693 WP_002953094.1 cell division ATP-binding protein FtsE -
  IBC08_RS05355 (IBC08_05345) queG 1024432..1025550 (-) 1119 WP_084829636.1 tRNA epoxyqueuosine(34) reductase QueG -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18842.29 Da        Isoelectric Point: 4.6250

>NTDB_id=418965 IBC08_RS05335 WP_082308976.1 1020941..1021423(-) (mutX) [Streptococcus thermophilus strain 24853]
MTKLATICYIDNGKELLLLHRNKKPNDVHEGKWISVGGKLEAGETPDECARREIFEETHLTVKKMDFKGMITFPEFTPGH
DWYTYVFKVTDFEGKLISDEESREGTLEWVPYDQVLTKQTWEGDYEIFKWILEDKPFFSAKFSYDCNQNLIDKTVTFYDT

Nucleotide


Download         Length: 483 bp        

>NTDB_id=418965 IBC08_RS05335 WP_082308976.1 1020941..1021423(-) (mutX) [Streptococcus thermophilus strain 24853]
ATGACAAAGTTAGCTACCATTTGTTATATTGACAATGGGAAGGAGCTTTTGCTCCTACATCGTAATAAAAAGCCTAATGA
TGTTCATGAAGGAAAGTGGATTTCTGTCGGGGGAAAACTAGAAGCGGGAGAAACGCCTGACGAATGTGCTCGTCGTGAAA
TTTTCGAGGAAACTCATTTGACAGTGAAAAAGATGGACTTCAAAGGTATGATTACCTTTCCAGAATTTACTCCGGGCCAC
GATTGGTATACCTATGTCTTTAAGGTGACTGATTTTGAAGGAAAACTCATTTCTGATGAGGAATCTCGTGAAGGGACACT
TGAATGGGTACCATATGATCAGGTTTTAACTAAACAAACCTGGGAAGGTGACTATGAGATTTTTAAGTGGATTCTAGAAG
ATAAACCTTTCTTCTCTGCAAAATTTAGCTACGATTGTAACCAAAACTTGATAGATAAAACTGTAACATTTTATGATACA
TAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(3-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

71.069

99.375

0.706

Multiple sequence alignment