Detailed information NTG0418965

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GWG05_RS02160
• Genome accession: NZ_CP047982
• Coordinates: 437369..438244 (-)
• Length: 291 a.a.
• NCBI ID: WP_053288093.1
• Uniprot ID: -
• Organism: Aeromonas caviae strain 1507-17068
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 432369..443244

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GWG05_RS02135 (GWG05_02140)	-	434118..435302 (+)	1185	WP_049637195.1	tetratricopeptide repeat protein	-
GWG05_RS02140 (GWG05_02145)	mutT	435311..435715 (+)	405	WP_171864957.1	8-oxo-dGTP diphosphatase MutT	-
GWG05_RS02145 (GWG05_02150)	yacG	435771..435965 (-)	195	WP_039040499.1	DNA gyrase inhibitor YacG	-
GWG05_RS02150 (GWG05_02155)	zapD	435976..436698 (-)	723	WP_043154103.1	cell division protein ZapD	-
GWG05_RS02155 (GWG05_02160)	coaE	436736..437350 (-)	615	WP_049637196.1	dephospho-CoA kinase	-
GWG05_RS02160 (GWG05_02165)	pilD	437369..438244 (-)	876	WP_053288093.1	prepilin peptidase	Machinery gene
GWG05_RS02165 (GWG05_02170)	pilC	438322..439563 (-)	1242	WP_180907144.1	type II secretion system F family protein	Machinery gene
GWG05_RS02170 (GWG05_02175)	pilB	439691..441397 (-)	1707	WP_042077628.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
GWG05_RS02175 (GWG05_02180)	-	441401..441841 (-)	441	WP_180907305.1	pilin	-
GWG05_RS02180 (GWG05_02185)	nadC	442166..443029 (-)	864	WP_180907145.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 31970.08 Da
• Isoelectric Point: 6.8230

>NTDB_id=418965 GWG05_RS02160 WP_053288093.1 437369..438244(-) (pilD) [Aeromonas caviae strain 1507-17068]
MVPLIELAQGLPWLYLSLIFLFSLMVGSFLNVVIHRLPIMMERAWHAEYSDYFGDGEETPPATGRYNLMVPRSRCPHCDH
PIGALENIPLLSWLCLRGRCRNCHAPISARYPLVELLTALLSVSVAAALSPGWGTLAALLLTWTLVALTFIDLDKMLLPD
QLTLPLLWGGLLFNLAGGFVPLADGVVGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSS
LAGAIIGIGLILLRNHHQGKPIPFGPYLAIAGWITLLWGDSITRWYLDVVL

Nucleotide

• Length: 876 bp

>NTDB_id=418965 GWG05_RS02160 WP_053288093.1 437369..438244(-) (pilD) [Aeromonas caviae strain 1507-17068]
ATGGTGCCTTTGATCGAACTGGCCCAGGGCTTGCCCTGGCTCTATCTCTCCTTGATTTTCCTTTTCTCCCTGATGGTGGG
CAGCTTCCTGAACGTGGTGATCCATCGCCTGCCCATCATGATGGAGCGGGCCTGGCATGCCGAATACAGCGACTATTTCG
GTGACGGTGAAGAGACTCCTCCTGCAACCGGACGATACAACCTCATGGTGCCTCGCTCCCGCTGCCCCCACTGCGACCAC
CCCATAGGGGCGCTGGAGAACATTCCCCTGTTGAGCTGGCTATGCCTCAGAGGGCGCTGCCGCAACTGCCACGCCCCCAT
TTCGGCTCGCTATCCCCTGGTCGAGCTGCTCACCGCCCTGCTGTCGGTCTCGGTAGCAGCCGCGCTTTCCCCCGGCTGGG
GCACCCTTGCCGCTTTGTTGCTCACCTGGACATTGGTCGCACTGACCTTCATCGACCTGGACAAGATGCTCTTGCCGGAT
CAGCTCACCCTGCCCCTGCTCTGGGGTGGCCTGCTGTTCAATCTGGCGGGCGGTTTCGTGCCCCTGGCCGATGGGGTGGT
CGGCGCCATGGCGGGTTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGGT
ACGGGGATTTCAAACTGCTGGCGGCGCTGGGCGCCTGGCTCGGCTGGCAAGCCTTGCCCATCGTGCTGCTGCTCTCTTCG
CTGGCGGGCGCCATCATCGGCATCGGTCTCATCCTGCTGCGCAACCACCACCAGGGCAAACCCATTCCCTTTGGCCCCTA
TCTCGCCATCGCGGGCTGGATAACGCTGCTGTGGGGCGATAGCATCACCCGCTGGTATCTTGATGTCGTGCTCTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (140-248)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.417	98.969	0.598
pilD	Vibrio campbellii strain DS40M4	56.897	99.656	0.567
pilD	Acinetobacter baumannii D1279779	51.971	95.876	0.498
pilD	Acinetobacter nosocomialis M2	51.971	95.876	0.498
pilD	Neisseria gonorrhoeae MS11	51.341	89.691	0.46