Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   M594_RS02140 Genome accession   NZ_CP047883
Coordinates   420958..421353 (+) Length   131 a.a.
NCBI ID   WP_173875848.1    Uniprot ID   A0A6M9F861
Organism   Streptococcus mitis strain S022-V3-A4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 417655..424855 420958..421353 within 0


Gene organization within MGE regions


Location: 417655..424855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M594_RS02115 (M594_02145) - 417655..418731 (+) 1077 WP_173875844.1 N-acetylmuramoyl-L-alanine amidase family protein -
  M594_RS02120 (M594_02150) - 418822..419121 (+) 300 WP_173875845.1 DUF4651 domain-containing protein -
  M594_RS02125 (M594_02155) - 419118..419435 (+) 318 WP_000615777.1 thioredoxin family protein -
  M594_RS02130 (M594_02160) ytpR 419451..420077 (+) 627 WP_173875846.1 YtpR family tRNA-binding protein -
  M594_RS02135 (M594_02165) - 420119..420880 (+) 762 WP_173875847.1 SDR family NAD(P)-dependent oxidoreductase -
  M594_RS02140 (M594_02170) ssbB/cilA 420958..421353 (+) 396 WP_173875848.1 single-stranded DNA-binding protein Machinery gene
  M594_RS02145 (M594_02175) groES 421509..421793 (+) 285 WP_000917335.1 co-chaperone GroES -
  M594_RS02150 (M594_02180) groL 421809..423431 (+) 1623 WP_173875849.1 chaperonin GroEL -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14925.93 Da        Isoelectric Point: 7.0191

>NTDB_id=418245 M594_RS02140 WP_173875848.1 420958..421353(+) (ssbB/cilA) [Streptococcus mitis strain S022-V3-A4]
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGKDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=418245 M594_RS02140 WP_173875848.1 420958..421353(+) (ssbB/cilA) [Streptococcus mitis strain S022-V3-A4]
ATGTATAATAAAGTTATCATGATTGGACGTTTAACGTCTACACCAGAATTGCACAAAACCAATAATGACAAGTCAGTAGC
GCGCGCAACGATCGCTGTGAACCGTCGTTACAAAGACCAAAACGGTGAACGCGAAGCTGATTTTGTTAATATGGTTTTAT
GGGGTAGACTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTTATTTCTGTGGATGGAGAATTACGTACCCGT
CGTTTTGAGAAAAACGGTCAGATGAACTACGTGACCGAAGTCCTTGTCACAGGATTCCAACTCTTGGAAAGTCGTGCCCA
ACGTGCTATGCGAGAAAATAACGCAGGGAAGGATTTGGCAGATTTGGTTTTGGAAGAGGAAGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M9F861

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae D39

99.237

100

0.992
  ssbB/cilA Streptococcus pneumoniae Rx1

99.237

100

0.992
  ssbB/cilA Streptococcus pneumoniae R6

99.237

100

0.992
  ssbB/cilA Streptococcus pneumoniae TIGR4

98.473

100

0.985
  ssbB/cilA Streptococcus mitis SK321

97.71

100

0.977
  ssbB/cilA Streptococcus mitis NCTC 12261

97.71

100

0.977
  ssbA Streptococcus mutans UA159

74.809

100

0.748
  ssbB Streptococcus sobrinus strain NIDR 6715-7

70.229

100

0.702
  ssbB Lactococcus lactis subsp. cremoris KW2

59.821

85.496

0.511
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405

Multiple sequence alignment