Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | E3T07_RS00585 | Genome accession | NZ_CP047781 |
| Coordinates | 100054..100482 (+) | Length | 142 a.a. |
| NCBI ID | WP_000934782.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain UP_1452 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 92239..135308 | 100054..100482 | within | 0 |
Gene organization within MGE regions
Location: 92239..135308
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3T07_RS00505 (E3T07_00505) | - | 92239..93285 (-) | 1047 | WP_001145722.1 | tyrosine-type recombinase/integrase | - |
| E3T07_RS00510 (E3T07_00510) | - | 93398..93577 (+) | 180 | WP_000337827.1 | hypothetical protein | - |
| E3T07_RS00515 (E3T07_00515) | - | 93557..94489 (-) | 933 | WP_000392183.1 | hypothetical protein | - |
| E3T07_RS15150 | - | 94521..94655 (-) | 135 | WP_001233917.1 | hypothetical protein | - |
| E3T07_RS00520 (E3T07_00520) | - | 94673..95134 (-) | 462 | WP_000525004.1 | hypothetical protein | - |
| E3T07_RS00525 (E3T07_00525) | - | 95147..95461 (-) | 315 | WP_000333630.1 | helix-turn-helix domain-containing protein | - |
| E3T07_RS00530 (E3T07_00530) | - | 95613..95849 (+) | 237 | WP_001121116.1 | helix-turn-helix domain-containing protein | - |
| E3T07_RS00535 (E3T07_00535) | - | 95863..96042 (+) | 180 | WP_000438352.1 | hypothetical protein | - |
| E3T07_RS00540 (E3T07_00540) | - | 96143..96625 (-) | 483 | WP_000394410.1 | hypothetical protein | - |
| E3T07_RS00545 (E3T07_00545) | - | 97071..97256 (+) | 186 | WP_000933365.1 | helix-turn-helix domain-containing protein | - |
| E3T07_RS00550 (E3T07_00550) | - | 97258..97998 (+) | 741 | WP_031783118.1 | phage antirepressor KilAC domain-containing protein | - |
| E3T07_RS00555 (E3T07_00555) | - | 98174..98404 (-) | 231 | WP_000395455.1 | hypothetical protein | - |
| E3T07_RS00560 (E3T07_00560) | - | 98475..98696 (+) | 222 | WP_000594789.1 | hypothetical protein | - |
| E3T07_RS00565 (E3T07_00565) | - | 98689..98850 (+) | 162 | WP_000066011.1 | DUF1270 domain-containing protein | - |
| E3T07_RS00570 (E3T07_00570) | - | 98947..99207 (+) | 261 | WP_000291090.1 | DUF1108 family protein | - |
| E3T07_RS00575 (E3T07_00575) | - | 99217..99438 (+) | 222 | WP_001077280.1 | DUF2483 family protein | - |
| E3T07_RS00580 (E3T07_00580) | - | 99431..100054 (+) | 624 | WP_000139720.1 | DUF1071 domain-containing protein | - |
| E3T07_RS00585 (E3T07_00585) | ssbA | 100054..100482 (+) | 429 | WP_000934782.1 | single-stranded DNA-binding protein | Machinery gene |
| E3T07_RS00590 (E3T07_00590) | - | 100496..101158 (+) | 663 | WP_160191355.1 | putative HNHc nuclease | - |
| E3T07_RS00595 (E3T07_00595) | - | 101164..101928 (+) | 765 | WP_000240900.1 | AP2 domain-containing protein | - |
| E3T07_RS00600 (E3T07_00600) | - | 101921..102664 (+) | 744 | WP_000139436.1 | conserved phage C-terminal domain-containing protein | - |
| E3T07_RS00605 (E3T07_00605) | - | 102675..103454 (+) | 780 | WP_000803056.1 | ATP-binding protein | - |
| E3T07_RS14920 | - | 103448..103609 (+) | 162 | WP_000237153.1 | hypothetical protein | - |
| E3T07_RS00610 (E3T07_00610) | - | 103622..103843 (+) | 222 | WP_001123688.1 | DUF3269 family protein | - |
| E3T07_RS00615 (E3T07_00615) | - | 103854..104258 (+) | 405 | WP_000049812.1 | DUF1064 domain-containing protein | - |
| E3T07_RS00620 (E3T07_00620) | - | 104263..104448 (+) | 186 | WP_001187263.1 | DUF3113 family protein | - |
| E3T07_RS00625 (E3T07_00625) | - | 104449..104717 (+) | 269 | Protein_129 | helix-turn-helix domain-containing protein | - |
| E3T07_RS00630 (E3T07_00630) | - | 104718..105077 (+) | 360 | WP_000029379.1 | SA1788 family PVL leukocidin-associated protein | - |
| E3T07_RS00635 (E3T07_00635) | - | 105078..105326 (+) | 249 | WP_001622146.1 | phi PVL orf 51-like protein | - |
| E3T07_RS00640 (E3T07_00640) | - | 105341..105733 (+) | 393 | WP_001062709.1 | hypothetical protein | - |
| E3T07_RS00645 (E3T07_00645) | - | 105730..105921 (+) | 192 | WP_000983947.1 | hypothetical protein | - |
| E3T07_RS00650 (E3T07_00650) | - | 105921..106352 (+) | 432 | WP_160191356.1 | acetyltransferase | - |
| E3T07_RS00655 (E3T07_00655) | - | 106345..106581 (+) | 237 | WP_001065103.1 | DUF1024 family protein | - |
| E3T07_RS00660 (E3T07_00660) | - | 106571..106813 (+) | 243 | WP_000700108.1 | hypothetical protein | - |
| E3T07_RS00665 (E3T07_00665) | - | 106806..107339 (+) | 534 | WP_000181819.1 | dUTP diphosphatase | - |
| E3T07_RS00670 (E3T07_00670) | - | 107376..107549 (+) | 174 | WP_001209219.1 | hypothetical protein | - |
| E3T07_RS00675 (E3T07_00675) | - | 107566..107802 (+) | 237 | WP_000195781.1 | DUF1381 domain-containing protein | - |
| E3T07_RS00680 (E3T07_00680) | - | 107827..108063 (+) | 237 | WP_000483477.1 | hypothetical protein | - |
| E3T07_RS00685 (E3T07_00685) | - | 108053..108439 (+) | 387 | WP_001623479.1 | hypothetical protein | - |
| E3T07_RS00690 (E3T07_00690) | rinB | 108439..108612 (+) | 174 | WP_160191433.1 | transcriptional activator RinB | - |
| E3T07_RS00695 (E3T07_00695) | - | 108613..109014 (+) | 402 | WP_000286968.1 | hypothetical protein | - |
| E3T07_RS00700 (E3T07_00700) | - | 109400..109861 (+) | 462 | WP_001794914.1 | hypothetical protein | - |
| E3T07_RS00705 (E3T07_00705) | - | 109854..111077 (+) | 1224 | WP_001037584.1 | PBSX family phage terminase large subunit | - |
| E3T07_RS00710 (E3T07_00710) | - | 111074..112498 (+) | 1425 | WP_000177426.1 | phage portal protein | - |
| E3T07_RS00715 (E3T07_00715) | - | 112467..113420 (+) | 954 | WP_000184131.1 | phage head morphogenesis protein | - |
| E3T07_RS00720 (E3T07_00720) | - | 113422..113628 (+) | 207 | WP_000346033.1 | hypothetical protein | - |
| E3T07_RS00725 (E3T07_00725) | - | 113731..114315 (+) | 585 | WP_001019221.1 | DUF4355 domain-containing protein | - |
| E3T07_RS00730 (E3T07_00730) | - | 114332..115246 (+) | 915 | WP_000235168.1 | phage major capsid protein | - |
| E3T07_RS14925 | - | 115258..115401 (+) | 144 | WP_000002931.1 | hypothetical protein | - |
| E3T07_RS00735 (E3T07_00735) | - | 115407..115757 (+) | 351 | WP_000177351.1 | phage head-tail adapter protein | - |
| E3T07_RS00740 (E3T07_00740) | - | 115769..116104 (+) | 336 | WP_000483041.1 | phage head closure protein | - |
| E3T07_RS00745 (E3T07_00745) | - | 116091..116498 (+) | 408 | WP_001151323.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| E3T07_RS00750 (E3T07_00750) | - | 116511..116936 (+) | 426 | WP_000270188.1 | DUF3168 domain-containing protein | - |
| E3T07_RS00755 (E3T07_00755) | - | 116937..117494 (+) | 558 | WP_000057582.1 | tail protein | - |
| E3T07_RS00760 (E3T07_00760) | - | 117560..118066 (+) | 507 | WP_000134337.1 | tail assembly chaperone | - |
| E3T07_RS00765 (E3T07_00765) | - | 118111..118395 (+) | 285 | WP_000880588.1 | hypothetical protein | - |
| E3T07_RS00770 (E3T07_00770) | - | 118399..121542 (+) | 3144 | WP_000379439.1 | hypothetical protein | - |
| E3T07_RS00775 (E3T07_00775) | - | 121557..122498 (+) | 942 | WP_042907189.1 | phage tail domain-containing protein | - |
| E3T07_RS00780 (E3T07_00780) | - | 122509..124395 (+) | 1887 | WP_160191357.1 | SGNH/GDSL hydrolase family protein | - |
| E3T07_RS00785 (E3T07_00785) | - | 124408..126306 (+) | 1899 | WP_000323268.1 | hypothetical protein | - |
| E3T07_RS00790 (E3T07_00790) | - | 126306..128129 (+) | 1824 | WP_000259622.1 | phage baseplate upper protein | - |
| E3T07_RS00795 (E3T07_00795) | - | 128129..128506 (+) | 378 | WP_000406973.1 | DUF2977 domain-containing protein | - |
| E3T07_RS00800 (E3T07_00800) | - | 128516..128689 (+) | 174 | WP_001800921.1 | XkdX family protein | - |
| E3T07_RS00805 (E3T07_00805) | - | 128730..129029 (+) | 300 | WP_000466784.1 | DUF2951 domain-containing protein | - |
| E3T07_RS00810 (E3T07_00810) | - | 129166..131040 (+) | 1875 | WP_000524041.1 | glucosaminidase domain-containing protein | - |
| E3T07_RS00815 (E3T07_00815) | - | 131053..132225 (+) | 1173 | WP_160191358.1 | BppU family phage baseplate upper protein | - |
| E3T07_RS00820 (E3T07_00820) | - | 132231..132626 (+) | 396 | WP_000398864.1 | hypothetical protein | - |
| E3T07_RS00825 (E3T07_00825) | - | 132682..133119 (+) | 438 | WP_160191359.1 | phage holin | - |
| E3T07_RS00830 (E3T07_00830) | - | 133100..134545 (+) | 1446 | WP_001148115.1 | SH3 domain-containing protein | - |
| E3T07_RS00835 (E3T07_00835) | - | 134788..134940 (+) | 153 | WP_001788502.1 | hypothetical protein | - |
| E3T07_RS00840 (E3T07_00840) | - | 135011..135121 (+) | 111 | WP_000139423.1 | hypothetical protein | - |
| E3T07_RS00845 (E3T07_00845) | - | 135123..135308 (+) | 186 | WP_001286805.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 15980.48 Da Isoelectric Point: 5.8724
>NTDB_id=415903 E3T07_RS00585 WP_000934782.1 100054..100482(+) (ssbA) [Staphylococcus aureus strain UP_1452]
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKDGQRVFVTEVAADSVQFLEPKNSNQQPNNNYHQQRQTQTGNNPFDNTTAITDDDLPF
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKDGQRVFVTEVAADSVQFLEPKNSNQQPNNNYHQQRQTQTGNNPFDNTTAITDDDLPF
Nucleotide
Download Length: 429 bp
>NTDB_id=415903 E3T07_RS00585 WP_000934782.1 100054..100482(+) (ssbA) [Staphylococcus aureus strain UP_1452]
ATGTTAAACAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCAAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGACGGGCAACGTGTGTTTGTTACAGAAGTAGCAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAGCAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACTTACCGTTCTGA
ATGTTAAACAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCAAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGACGGGCAACGTGTGTTTGTTACAGAAGTAGCAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAGCAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACTTACCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
58.721 |
100 |
0.711 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50 |
100 |
0.599 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
74.648 |
0.437 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
42.657 |
100 |
0.43 |
| ssbA | Streptococcus mutans UA159 |
41.549 |
100 |
0.415 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
40.845 |
100 |
0.408 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
40.845 |
100 |
0.408 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
40.141 |
100 |
0.401 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
40.141 |
100 |
0.401 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
40.141 |
100 |
0.401 |
| ssbB/cilA | Streptococcus mitis SK321 |
40.141 |
100 |
0.401 |