Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | GU333_RS01105 | Genome accession | NZ_CP047630 |
| Coordinates | 207243..207638 (+) | Length | 131 a.a. |
| NCBI ID | WP_031366343.1 | Uniprot ID | A0A1K2H9Q1 |
| Organism | Lactococcus raffinolactis strain Lr_18_12S | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 169596..228543 | 207243..207638 | within | 0 |
Gene organization within MGE regions
Location: 169596..228543
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GU333_RS00930 (GU333_00930) | rfbB | 169596..170645 (+) | 1050 | WP_167841758.1 | dTDP-glucose 4,6-dehydratase | - |
| GU333_RS00935 (GU333_00935) | rfbD | 170642..171496 (+) | 855 | WP_167841759.1 | dTDP-4-dehydrorhamnose reductase | - |
| GU333_RS00940 (GU333_00940) | - | 171610..172863 (+) | 1254 | WP_167841760.1 | ISL3 family transposase | - |
| GU333_RS00945 (GU333_00945) | - | 173181..174386 (+) | 1206 | WP_167841761.1 | glycosyltransferase family 1 protein | - |
| GU333_RS00950 (GU333_00950) | - | 174376..175317 (+) | 942 | WP_167841762.1 | glycosyltransferase family 2 protein | - |
| GU333_RS00955 (GU333_00955) | - | 175314..176123 (+) | 810 | WP_167841763.1 | ABC transporter permease | - |
| GU333_RS00960 (GU333_00960) | - | 176135..177316 (+) | 1182 | WP_167841764.1 | ABC transporter ATP-binding protein | - |
| GU333_RS00965 (GU333_00965) | - | 177356..179389 (+) | 2034 | Protein_164 | rhamnan synthesis F family protein | - |
| GU333_RS00970 (GU333_00970) | - | 179382..180734 (+) | 1353 | WP_167841766.1 | DUF2142 domain-containing protein | - |
| GU333_RS00975 (GU333_00975) | - | 180738..181976 (+) | 1239 | WP_167841767.1 | glycosyltransferase family 4 protein | - |
| GU333_RS00980 (GU333_00980) | - | 181973..182791 (+) | 819 | WP_167841768.1 | glycosyltransferase | - |
| GU333_RS00985 (GU333_00985) | - | 182793..183521 (+) | 729 | WP_167841769.1 | glycosyltransferase family 2 protein | - |
| GU333_RS00990 (GU333_00990) | - | 183521..183928 (+) | 408 | WP_167842505.1 | DUF2304 domain-containing protein | - |
| GU333_RS00995 (GU333_00995) | - | 183929..184975 (+) | 1047 | WP_167841770.1 | glycosyltransferase family A protein | - |
| GU333_RS01000 (GU333_01000) | - | 185055..186041 (+) | 987 | WP_167841771.1 | glycosyltransferase family 2 protein | - |
| GU333_RS01005 (GU333_01005) | - | 186058..187053 (+) | 996 | WP_167841772.1 | glycosyltransferase | - |
| GU333_RS01010 (GU333_01010) | - | 187050..187871 (+) | 822 | WP_167841773.1 | LicD family protein | - |
| GU333_RS01015 (GU333_01015) | - | 187874..188596 (+) | 723 | WP_167841774.1 | IspD/TarI family cytidylyltransferase | - |
| GU333_RS01020 (GU333_01020) | - | 188600..189652 (+) | 1053 | WP_167841775.1 | NAD-dependent epimerase/dehydratase family protein | - |
| GU333_RS01025 (GU333_01025) | - | 189649..190596 (+) | 948 | WP_167841776.1 | glycosyltransferase | - |
| GU333_RS01030 (GU333_01030) | - | 190609..191430 (+) | 822 | WP_167841777.1 | glycosyltransferase family 2 protein | - |
| GU333_RS01035 (GU333_01035) | - | 191468..192415 (+) | 948 | WP_167841778.1 | glycosyltransferase family 2 protein | - |
| GU333_RS01040 (GU333_01040) | - | 192455..193882 (+) | 1428 | WP_167841779.1 | flippase | - |
| GU333_RS01045 (GU333_01045) | - | 193908..195602 (+) | 1695 | WP_167841780.1 | hypothetical protein | - |
| GU333_RS01050 (GU333_01050) | - | 195612..197018 (+) | 1407 | WP_167841781.1 | DUF2142 domain-containing protein | - |
| GU333_RS01055 (GU333_01055) | glf | 197096..198226 (+) | 1131 | WP_167841782.1 | UDP-galactopyranose mutase | - |
| GU333_RS01060 (GU333_01060) | - | 198455..200374 (+) | 1920 | WP_167841783.1 | Ig-like domain-containing protein | - |
| GU333_RS01065 (GU333_01065) | - | 200392..200766 (+) | 375 | WP_167841784.1 | hypothetical protein | - |
| GU333_RS01070 (GU333_01070) | - | 200889..202262 (+) | 1374 | WP_167841785.1 | GBS Bsp-like repeat-containing protein | - |
| GU333_RS01075 (GU333_01075) | - | 202280..203815 (+) | 1536 | WP_167841786.1 | glucosaminidase domain-containing protein | - |
| GU333_RS01080 (GU333_01080) | - | 204220..204612 (+) | 393 | WP_167841787.1 | HU family DNA-binding protein | - |
| GU333_RS01085 (GU333_01085) | pepA | 204671..205756 (-) | 1086 | WP_167841788.1 | glutamyl aminopeptidase | - |
| GU333_RS01090 (GU333_01090) | - | 205896..206210 (+) | 315 | WP_031366346.1 | hypothetical protein | - |
| GU333_RS01095 (GU333_01095) | - | 206212..206529 (+) | 318 | WP_167841789.1 | thioredoxin family protein | - |
| GU333_RS01100 (GU333_01100) | ytpR | 206561..207184 (+) | 624 | WP_167841790.1 | YtpR family tRNA-binding protein | - |
| GU333_RS01105 (GU333_01105) | ssbB | 207243..207638 (+) | 396 | WP_031366343.1 | single-stranded DNA-binding protein | Machinery gene |
| GU333_RS01110 (GU333_01110) | groES | 207844..208128 (+) | 285 | WP_167841791.1 | co-chaperone GroES | - |
| GU333_RS01115 (GU333_01115) | groL | 208187..209818 (+) | 1632 | WP_167841792.1 | chaperonin GroEL | - |
| GU333_RS01120 (GU333_01120) | - | 209923..210444 (-) | 522 | WP_167838359.1 | hypothetical protein | - |
| GU333_RS01125 (GU333_01125) | - | 210775..212067 (+) | 1293 | WP_138492029.1 | adenylosuccinate synthase | - |
| GU333_RS01130 (GU333_01130) | - | 212191..214722 (+) | 2532 | WP_167841793.1 | M1 family metallopeptidase | - |
| GU333_RS01135 (GU333_01135) | - | 214897..215100 (+) | 204 | WP_167841794.1 | hypothetical protein | - |
| GU333_RS01140 (GU333_01140) | - | 215141..216610 (+) | 1470 | WP_138492032.1 | SPFH domain-containing protein | - |
| GU333_RS01145 (GU333_01145) | - | 216567..216971 (-) | 405 | WP_167841795.1 | hypothetical protein | - |
| GU333_RS01150 (GU333_01150) | rplU | 217010..217321 (+) | 312 | WP_061773673.1 | 50S ribosomal protein L21 | - |
| GU333_RS01155 (GU333_01155) | - | 217339..217671 (+) | 333 | WP_061773674.1 | ribosomal-processing cysteine protease Prp | - |
| GU333_RS01160 (GU333_01160) | rpmA | 217835..218125 (+) | 291 | WP_003137946.1 | 50S ribosomal protein L27 | - |
| GU333_RS01165 (GU333_01165) | pepT | 218255..219487 (+) | 1233 | WP_167841796.1 | peptidase T | - |
| GU333_RS01170 (GU333_01170) | - | 219551..219985 (-) | 435 | WP_167838363.1 | universal stress protein | - |
| GU333_RS01175 (GU333_01175) | - | 220235..220531 (+) | 297 | WP_061773676.1 | hypothetical protein | - |
| GU333_RS01180 (GU333_01180) | - | 220669..222720 (+) | 2052 | WP_167842506.1 | sodium:proton antiporter | - |
| GU333_RS01185 (GU333_01185) | - | 222770..223912 (+) | 1143 | WP_167838364.1 | cysteine desulfurase family protein | - |
| GU333_RS01190 (GU333_01190) | thiI | 223952..225178 (+) | 1227 | WP_167841797.1 | tRNA uracil 4-sulfurtransferase ThiI | - |
| GU333_RS01195 (GU333_01195) | - | 225197..226606 (+) | 1410 | WP_096039933.1 | MFS transporter | - |
| GU333_RS01200 (GU333_01200) | - | 227290..228543 (-) | 1254 | WP_167841760.1 | ISL3 family transposase | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 14729.89 Da Isoelectric Point: 5.9329
>NTDB_id=414717 GU333_RS01105 WP_031366343.1 207243..207638(+) (ssbB) [Lactococcus raffinolactis strain Lr_18_12S]
MLNKSLLIGRLTAQPEVKKTPTDKSVLRVTLAVSRQFKTADGQREADFLTIVIWGKPAELFASYAKKGSLVSIEGELRTR
RYEDKTGVTHYVTEVLCQQFNLLESRAAVALRENQVDDVSDVMLEAEELPF
MLNKSLLIGRLTAQPEVKKTPTDKSVLRVTLAVSRQFKTADGQREADFLTIVIWGKPAELFASYAKKGSLVSIEGELRTR
RYEDKTGVTHYVTEVLCQQFNLLESRAAVALRENQVDDVSDVMLEAEELPF
Nucleotide
Download Length: 396 bp
>NTDB_id=414717 GU333_RS01105 WP_031366343.1 207243..207638(+) (ssbB) [Lactococcus raffinolactis strain Lr_18_12S]
ATGTTAAATAAGAGTTTATTAATTGGTCGTTTGACCGCACAGCCGGAAGTGAAAAAAACGCCGACGGATAAATCCGTCTT
GCGCGTGACCTTAGCGGTTAGTCGGCAGTTTAAGACTGCTGACGGCCAACGCGAGGCAGATTTTTTGACCATTGTCATCT
GGGGGAAACCAGCAGAGTTGTTCGCATCTTATGCTAAAAAAGGGAGTCTGGTCTCAATCGAGGGAGAACTACGGACACGA
CGGTATGAAGACAAGACGGGTGTGACTCACTATGTGACGGAAGTCTTATGCCAGCAGTTTAATTTACTAGAAAGTCGCGC
TGCCGTTGCTTTAAGAGAAAATCAAGTTGATGATGTCTCAGACGTGATGTTAGAGGCTGAAGAATTACCTTTTTAA
ATGTTAAATAAGAGTTTATTAATTGGTCGTTTGACCGCACAGCCGGAAGTGAAAAAAACGCCGACGGATAAATCCGTCTT
GCGCGTGACCTTAGCGGTTAGTCGGCAGTTTAAGACTGCTGACGGCCAACGCGAGGCAGATTTTTTGACCATTGTCATCT
GGGGGAAACCAGCAGAGTTGTTCGCATCTTATGCTAAAAAAGGGAGTCTGGTCTCAATCGAGGGAGAACTACGGACACGA
CGGTATGAAGACAAGACGGGTGTGACTCACTATGTGACGGAAGTCTTATGCCAGCAGTTTAATTTACTAGAAAGTCGCGC
TGCCGTTGCTTTAAGAGAAAATCAAGTTGATGATGTCTCAGACGTGATGTTAGAGGCTGAAGAATTACCTTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
64.394 |
100 |
0.649 |
| ssbA | Streptococcus mutans UA159 |
62.879 |
100 |
0.634 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
59.848 |
100 |
0.603 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
59.848 |
100 |
0.603 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
59.091 |
100 |
0.595 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
59.091 |
100 |
0.595 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
59.091 |
100 |
0.595 |
| ssbB/cilA | Streptococcus mitis SK321 |
59.091 |
100 |
0.595 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
60 |
87.786 |
0.527 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
47.788 |
86.26 |
0.412 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
45.283 |
80.916 |
0.366 |