Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | GU336_RS02175 | Genome accession | NZ_CP047616 |
| Coordinates | 405027..405422 (+) | Length | 131 a.a. |
| NCBI ID | WP_031366343.1 | Uniprot ID | A0A1K2H9Q1 |
| Organism | Lactococcus raffinolactis strain Lr_19_5 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 389846..409850 | 405027..405422 | within | 0 |
Gene organization within MGE regions
Location: 389846..409850
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GU336_RS02110 (GU336_02110) | - | 389846..391159 (+) | 1314 | WP_167838348.1 | glycosyltransferase | - |
| GU336_RS02115 (GU336_02115) | - | 391239..392168 (+) | 930 | WP_167838349.1 | glycosyltransferase family 2 protein | - |
| GU336_RS02120 (GU336_02120) | - | 392241..393749 (+) | 1509 | WP_167838350.1 | hypothetical protein | - |
| GU336_RS02125 (GU336_02125) | - | 393766..394173 (+) | 408 | WP_167838351.1 | hypothetical protein | - |
| GU336_RS02130 (GU336_02130) | - | 394526..396007 (+) | 1482 | WP_167838352.1 | CHAP domain-containing protein | - |
| GU336_RS02135 (GU336_02135) | - | 396191..397141 (-) | 951 | WP_167838195.1 | IS30 family transposase | - |
| GU336_RS02140 (GU336_02140) | - | 397329..399071 (+) | 1743 | WP_167838353.1 | serine hydrolase | - |
| GU336_RS02145 (GU336_02145) | - | 399213..400163 (-) | 951 | WP_167838195.1 | IS30 family transposase | - |
| GU336_RS02150 (GU336_02150) | - | 400430..402400 (+) | 1971 | WP_167838354.1 | glucosaminidase domain-containing protein | - |
| GU336_RS02155 (GU336_02155) | pepA | 402458..403543 (-) | 1086 | WP_167838355.1 | glutamyl aminopeptidase | - |
| GU336_RS02160 (GU336_02160) | - | 403682..403996 (+) | 315 | WP_167838356.1 | hypothetical protein | - |
| GU336_RS02165 (GU336_02165) | - | 403998..404315 (+) | 318 | WP_167838357.1 | thioredoxin family protein | - |
| GU336_RS02170 (GU336_02170) | ytpR | 404345..404968 (+) | 624 | WP_031366344.1 | YtpR family tRNA-binding protein | - |
| GU336_RS02175 (GU336_02175) | ssbB | 405027..405422 (+) | 396 | WP_031366343.1 | single-stranded DNA-binding protein | Machinery gene |
| GU336_RS02180 (GU336_02180) | groES | 405628..405912 (+) | 285 | WP_003138237.1 | co-chaperone GroES | - |
| GU336_RS02185 (GU336_02185) | groL | 405971..407602 (+) | 1632 | WP_167838358.1 | chaperonin GroEL | - |
| GU336_RS02190 (GU336_02190) | - | 407707..408228 (-) | 522 | WP_167838359.1 | hypothetical protein | - |
| GU336_RS02195 (GU336_02195) | - | 408558..409850 (+) | 1293 | WP_138492029.1 | adenylosuccinate synthase | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 14729.89 Da Isoelectric Point: 5.9329
>NTDB_id=414632 GU336_RS02175 WP_031366343.1 405027..405422(+) (ssbB) [Lactococcus raffinolactis strain Lr_19_5]
MLNKSLLIGRLTAQPEVKKTPTDKSVLRVTLAVSRQFKTADGQREADFLTIVIWGKPAELFASYAKKGSLVSIEGELRTR
RYEDKTGVTHYVTEVLCQQFNLLESRAAVALRENQVDDVSDVMLEAEELPF
MLNKSLLIGRLTAQPEVKKTPTDKSVLRVTLAVSRQFKTADGQREADFLTIVIWGKPAELFASYAKKGSLVSIEGELRTR
RYEDKTGVTHYVTEVLCQQFNLLESRAAVALRENQVDDVSDVMLEAEELPF
Nucleotide
Download Length: 396 bp
>NTDB_id=414632 GU336_RS02175 WP_031366343.1 405027..405422(+) (ssbB) [Lactococcus raffinolactis strain Lr_19_5]
ATGTTAAATAAGAGTTTATTAATTGGTCGTTTGACCGCACAGCCGGAAGTGAAAAAAACGCCGACGGATAAATCTGTTTT
GCGCGTGACCTTAGCGGTTAGTCGGCAGTTTAAAACTGCTGACGGCCAACGCGAGGCGGATTTCTTGACCATTGTCATCT
GGGGGAAACCAGCAGAGTTGTTCGCATCATATGCTAAAAAAGGGAGTCTGGTCTCAATTGAGGGAGAACTACGGACACGA
CGGTATGAAGACAAGACGGGTGTGACCCACTATGTGACGGAAGTCTTATGCCAGCAGTTTAATTTACTAGAAAGTCGCGC
TGCCGTTGCTTTAAGAGAAAATCAAGTTGATGATGTCTCAGACGTGATGTTAGAGGCTGAAGAATTACCATTTTAA
ATGTTAAATAAGAGTTTATTAATTGGTCGTTTGACCGCACAGCCGGAAGTGAAAAAAACGCCGACGGATAAATCTGTTTT
GCGCGTGACCTTAGCGGTTAGTCGGCAGTTTAAAACTGCTGACGGCCAACGCGAGGCGGATTTCTTGACCATTGTCATCT
GGGGGAAACCAGCAGAGTTGTTCGCATCATATGCTAAAAAAGGGAGTCTGGTCTCAATTGAGGGAGAACTACGGACACGA
CGGTATGAAGACAAGACGGGTGTGACCCACTATGTGACGGAAGTCTTATGCCAGCAGTTTAATTTACTAGAAAGTCGCGC
TGCCGTTGCTTTAAGAGAAAATCAAGTTGATGATGTCTCAGACGTGATGTTAGAGGCTGAAGAATTACCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
64.394 |
100 |
0.649 |
| ssbA | Streptococcus mutans UA159 |
62.879 |
100 |
0.634 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
59.848 |
100 |
0.603 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
59.848 |
100 |
0.603 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
59.091 |
100 |
0.595 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
59.091 |
100 |
0.595 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
59.091 |
100 |
0.595 |
| ssbB/cilA | Streptococcus mitis SK321 |
59.091 |
100 |
0.595 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
60 |
87.786 |
0.527 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
47.788 |
86.26 |
0.412 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
45.283 |
80.916 |
0.366 |