Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   GT360_RS13290 Genome accession   NZ_CP047475
Coordinates   2856173..2857804 (-) Length   543 a.a.
NCBI ID   WP_239502635.1    Uniprot ID   -
Organism   Vibrio astriarenae strain HN897     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2851173..2862804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GT360_RS13270 (GT360_13280) - 2851903..2852724 (-) 822 WP_164649307.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  GT360_RS13275 (GT360_13285) - 2852806..2854278 (-) 1473 WP_164649308.1 AAA family ATPase -
  GT360_RS13280 (GT360_13290) aroB 2854324..2855424 (-) 1101 WP_164649309.1 3-dehydroquinate synthase -
  GT360_RS13285 (GT360_13295) aroK 2855453..2855971 (-) 519 WP_164649310.1 shikimate kinase AroK -
  GT360_RS13290 (GT360_13300) pilQ 2856173..2857804 (-) 1632 WP_239502635.1 type IV pilus secretin PilQ Machinery gene
  GT360_RS13295 (GT360_13305) pilP 2857901..2858416 (-) 516 WP_164649312.1 pilus assembly protein PilP Machinery gene
  GT360_RS13300 (GT360_13310) pilO 2858406..2858996 (-) 591 WP_164649313.1 type 4a pilus biogenesis protein PilO Machinery gene
  GT360_RS13305 (GT360_13315) pilN 2858989..2859594 (-) 606 WP_164649314.1 PilN domain-containing protein Machinery gene
  GT360_RS13310 (GT360_13320) pilM 2859584..2860558 (-) 975 WP_164649315.1 type IV pilus assembly protein PilM -

Sequence

Protein


Download         Length: 543 a.a.        Molecular weight: 59460.62 Da        Isoelectric Point: 4.3136

>NTDB_id=413625 GT360_RS13290 WP_239502635.1 2856173..2857804(-) (pilQ) [Vibrio astriarenae strain HN897]
MPLAMASDSNQLQSIDFRLNAQREALLIVELASPSVVVDLQRKSDGLNIELLKTDVSDDQLYLLDVKDFSTAVETIEVFR
NEPSTRLLVSIEGNYHYDYRLKGQYLEVTIGEEKELQVFTPSALDKEGKLISINFQDIPVRNVLQLIADYNDFNLVVSDS
VAGNLTLRLDGVPWQQVLEIILQVKGLDKRVDGTVILIAPKAELDLREQQQLEKARLAEELGELSSEIIKINFANAADIA
DMIGGEGAFSMLSERGSISIDDRTNSLLLRELPDNIGVIREIVSSLDIPVKQVQIEARLVSINEGDMDELGVRWGFTSTN
GHNTVGGSIESNLFQKGLLDEDTLPIEDFLNVNLAATSANASSIAFQVAKLGSDTLLDLELSALQRESKAEIISSPRLIT
TNKKPAYIEQGTEIPYLESSSSGATTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGEVVKTGTGEAVAINTQRIGT
QVLVNNGETVVLGGIFQHSVTNSTDKVPVLGDLPLFGTLFKRTYEQVGKSELLIFVTPKVVIQ

Nucleotide


Download         Length: 1632 bp        

>NTDB_id=413625 GT360_RS13290 WP_239502635.1 2856173..2857804(-) (pilQ) [Vibrio astriarenae strain HN897]
ATGCCGCTTGCAATGGCCAGCGATAGCAATCAACTGCAGAGTATCGATTTTCGTTTAAATGCCCAGCGAGAAGCTCTGCT
CATTGTTGAGCTAGCATCACCGTCAGTGGTGGTGGATCTACAGCGAAAGAGTGATGGACTGAATATTGAACTGCTGAAAA
CCGATGTCAGTGATGACCAATTGTATCTGCTCGACGTCAAAGATTTTTCCACGGCTGTCGAGACAATAGAGGTGTTTCGC
AATGAGCCAAGCACGCGCCTATTGGTGTCGATTGAGGGGAATTATCACTATGACTATCGCTTAAAAGGTCAATATCTGGA
AGTCACGATAGGGGAGGAAAAAGAGCTGCAGGTATTTACCCCGAGTGCGTTAGACAAAGAAGGCAAGCTCATCTCGATTA
ATTTTCAGGATATTCCTGTGCGCAATGTCTTGCAGCTGATTGCCGATTACAACGATTTCAATCTTGTCGTCTCGGACTCA
GTCGCTGGTAATCTGACTCTTAGGCTTGATGGCGTGCCTTGGCAGCAGGTGCTAGAGATTATTCTGCAGGTGAAAGGGTT
AGATAAACGGGTCGATGGCACTGTTATCTTGATTGCCCCAAAGGCTGAACTTGATTTGCGAGAGCAACAACAACTGGAAA
AGGCACGCCTTGCCGAAGAGCTCGGTGAGCTTTCGTCTGAAATCATCAAAATTAACTTTGCTAATGCTGCCGATATCGCC
GATATGATTGGTGGGGAAGGGGCGTTCAGTATGCTTTCTGAACGTGGGTCAATCAGCATTGATGATAGAACCAATTCGCT
GCTTTTGCGTGAACTGCCAGACAATATTGGGGTCATTCGCGAGATTGTCAGCTCGCTGGATATACCGGTTAAACAGGTGC
AAATTGAAGCGAGGTTGGTCTCTATTAACGAAGGGGACATGGATGAACTTGGCGTCCGCTGGGGCTTTACCTCCACCAAT
GGTCACAATACCGTTGGTGGGAGTATTGAGAGCAACCTGTTCCAAAAGGGTTTGTTGGATGAGGACACCCTGCCGATTGA
AGACTTCCTCAACGTAAACCTAGCAGCCACATCTGCCAACGCCTCATCCATTGCGTTTCAGGTCGCCAAACTCGGCTCAG
ATACCCTGTTGGATTTAGAACTCTCTGCGCTACAACGGGAGTCAAAAGCCGAAATTATTTCGAGCCCACGCCTTATCACC
ACCAATAAAAAGCCTGCTTATATTGAGCAAGGTACAGAAATTCCTTATCTAGAGTCCTCTTCTAGCGGAGCAACAACGGT
CGCCTTTAAGAAGGCGGTGTTGAGTTTAAAGGTGACGCCGCAGATCACGCCGGATAATCGTTTGGTGTTGGATCTGAGCG
TCACTCAAGACAGACCGGGTGAAGTGGTGAAAACAGGCACGGGTGAGGCGGTTGCCATTAACACTCAACGTATTGGTACG
CAGGTATTGGTCAATAATGGTGAAACCGTGGTGCTGGGTGGCATCTTTCAGCACAGCGTGACCAACTCTACCGATAAAGT
GCCTGTGCTTGGTGATTTGCCGTTGTTTGGTACCCTGTTTAAACGTACCTATGAACAGGTCGGTAAGAGTGAGTTATTGA
TCTTTGTTACCCCGAAAGTGGTGATTCAATAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(383-541)

Bacterial type II/III secretion system short domain (Secretin_N)

(227-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

80.037

99.632

0.797
  pilQ Vibrio cholerae strain A1552

80.037

99.632

0.797
  pilQ Vibrio campbellii strain DS40M4

76.673

100

0.781
  pilQ Legionella pneumophila strain Lp02

41.758

100

0.42
  pilQ Legionella pneumophila strain ERS1305867

41.758

100

0.42
  comQ Acinetobacter baylyi ADP1

38.676

100

0.409
  pilQ Pseudomonas aeruginosa PAK

39.286

100

0.405
  pilQ Acinetobacter baumannii D1279779

36.333

100

0.394
  pilQ Acinetobacter baumannii strain A118

36.333

100

0.394

Multiple sequence alignment