Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | GT360_RS13305 | Genome accession | NZ_CP047475 |
| Coordinates | 2858989..2859594 (-) | Length | 201 a.a. |
| NCBI ID | WP_164649314.1 | Uniprot ID | A0A7Z2T4S3 |
| Organism | Vibrio astriarenae strain HN897 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2853989..2864594
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GT360_RS13280 (GT360_13290) | aroB | 2854324..2855424 (-) | 1101 | WP_164649309.1 | 3-dehydroquinate synthase | - |
| GT360_RS13285 (GT360_13295) | aroK | 2855453..2855971 (-) | 519 | WP_164649310.1 | shikimate kinase AroK | - |
| GT360_RS13290 (GT360_13300) | pilQ | 2856173..2857804 (-) | 1632 | WP_239502635.1 | type IV pilus secretin PilQ | Machinery gene |
| GT360_RS13295 (GT360_13305) | pilP | 2857901..2858416 (-) | 516 | WP_164649312.1 | pilus assembly protein PilP | Machinery gene |
| GT360_RS13300 (GT360_13310) | pilO | 2858406..2858996 (-) | 591 | WP_164649313.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| GT360_RS13305 (GT360_13315) | pilN | 2858989..2859594 (-) | 606 | WP_164649314.1 | PilN domain-containing protein | Machinery gene |
| GT360_RS13310 (GT360_13320) | pilM | 2859584..2860558 (-) | 975 | WP_164649315.1 | type IV pilus assembly protein PilM | - |
| GT360_RS13315 (GT360_13325) | - | 2860697..2863195 (+) | 2499 | WP_164649316.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 201 a.a. Molecular weight: 23328.88 Da Isoelectric Point: 10.1622
>NTDB_id=413628 GT360_RS13305 WP_164649314.1 2858989..2859594(-) (pilN) [Vibrio astriarenae strain HN897]
MLPSINILPWREQRREAHRQRFFQSVVLSLVVAFGLQFALGRYAEQQQRQQQTRLDYLNQQIVKVDKRIAAMKVSEKEHQ
ALLTRLEVVETLQRQRNKTTDFMNLMPTLIPEGVYVDKIKMNGVLVEVTGISDSTARLATMLDSLEKSPQLNNVEMHSIV
HDKPRFGKKYQTFKVSFELAQDADTASVLPRFHAEEVRRYG
MLPSINILPWREQRREAHRQRFFQSVVLSLVVAFGLQFALGRYAEQQQRQQQTRLDYLNQQIVKVDKRIAAMKVSEKEHQ
ALLTRLEVVETLQRQRNKTTDFMNLMPTLIPEGVYVDKIKMNGVLVEVTGISDSTARLATMLDSLEKSPQLNNVEMHSIV
HDKPRFGKKYQTFKVSFELAQDADTASVLPRFHAEEVRRYG
Nucleotide
Download Length: 606 bp
>NTDB_id=413628 GT360_RS13305 WP_164649314.1 2858989..2859594(-) (pilN) [Vibrio astriarenae strain HN897]
ATGCTACCTAGCATCAACATACTCCCATGGCGGGAGCAACGCAGAGAGGCGCATCGCCAGCGCTTTTTCCAATCAGTCGT
ATTGAGCTTAGTGGTGGCCTTTGGTTTGCAGTTTGCGCTGGGGCGTTATGCCGAGCAGCAACAAAGACAGCAGCAGACAC
GTTTAGACTATTTGAATCAACAGATTGTAAAGGTAGACAAACGTATTGCCGCGATGAAGGTGAGTGAAAAAGAGCATCAA
GCACTGCTGACTCGCCTAGAAGTTGTTGAGACATTGCAGCGCCAGCGCAATAAAACCACCGATTTTATGAACCTAATGCC
AACGCTAATCCCCGAAGGGGTCTACGTCGACAAAATCAAGATGAATGGTGTGCTGGTTGAGGTAACAGGCATCAGTGATA
GCACCGCTCGGCTGGCGACGATGCTCGATAGTTTGGAAAAATCACCGCAGCTAAACAATGTTGAAATGCATTCGATTGTT
CATGACAAGCCGCGCTTTGGCAAAAAGTATCAAACCTTTAAGGTCTCTTTTGAGCTCGCACAGGATGCTGATACAGCCAG
TGTATTGCCTCGCTTTCATGCAGAGGAGGTGAGACGCTATGGTTGA
ATGCTACCTAGCATCAACATACTCCCATGGCGGGAGCAACGCAGAGAGGCGCATCGCCAGCGCTTTTTCCAATCAGTCGT
ATTGAGCTTAGTGGTGGCCTTTGGTTTGCAGTTTGCGCTGGGGCGTTATGCCGAGCAGCAACAAAGACAGCAGCAGACAC
GTTTAGACTATTTGAATCAACAGATTGTAAAGGTAGACAAACGTATTGCCGCGATGAAGGTGAGTGAAAAAGAGCATCAA
GCACTGCTGACTCGCCTAGAAGTTGTTGAGACATTGCAGCGCCAGCGCAATAAAACCACCGATTTTATGAACCTAATGCC
AACGCTAATCCCCGAAGGGGTCTACGTCGACAAAATCAAGATGAATGGTGTGCTGGTTGAGGTAACAGGCATCAGTGATA
GCACCGCTCGGCTGGCGACGATGCTCGATAGTTTGGAAAAATCACCGCAGCTAAACAATGTTGAAATGCATTCGATTGTT
CATGACAAGCCGCGCTTTGGCAAAAAGTATCAAACCTTTAAGGTCTCTTTTGAGCTCGCACAGGATGCTGATACAGCCAG
TGTATTGCCTCGCTTTCATGCAGAGGAGGTGAGACGCTATGGTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio cholerae strain A1552 |
61.453 |
89.055 |
0.547 |
| pilN | Vibrio campbellii strain DS40M4 |
60.452 |
88.06 |
0.532 |