Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RTA_RS14925 Genome accession   NC_015677
Coordinates   3104082..3105299 (+) Length   405 a.a.
NCBI ID   WP_013902249.1    Uniprot ID   F5Y6E4
Organism   Ramlibacter tataouinensis TTB310     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3099082..3110299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RTA_RS14895 (Rta_29100) cgtA 3099139..3100206 (-) 1068 WP_041675627.1 Obg family GTPase CgtA -
  RTA_RS14900 (Rta_29110) rpmA 3100280..3100540 (-) 261 WP_013902245.1 50S ribosomal protein L27 -
  RTA_RS14905 (Rta_29120) rplU 3100553..3100864 (-) 312 WP_013902246.1 50S ribosomal protein L21 -
  RTA_RS14910 (Rta_29130) - 3101116..3102045 (+) 930 WP_049871302.1 polyprenyl synthetase family protein -
  RTA_RS14920 (Rta_29140) pilB 3102305..3104044 (+) 1740 WP_041675628.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RTA_RS14925 (Rta_29150) pilC 3104082..3105299 (+) 1218 WP_013902249.1 type II secretion system F family protein Machinery gene
  RTA_RS14930 (Rta_29160) pilD 3105299..3106141 (+) 843 WP_013902250.1 A24 family peptidase Machinery gene
  RTA_RS14935 (Rta_29170) coaE 3106155..3106754 (+) 600 WP_013902251.1 dephospho-CoA kinase -
  RTA_RS14940 (Rta_29180) zapD 3106764..3107519 (+) 756 WP_013902252.1 cell division protein ZapD -
  RTA_RS14945 (Rta_29190) - 3107528..3107740 (+) 213 WP_041675629.1 DNA gyrase inhibitor YacG -
  RTA_RS14950 (Rta_29200) - 3107787..3108143 (-) 357 WP_013902254.1 hypothetical protein -
  RTA_RS14955 (Rta_29210) - 3108248..3108445 (-) 198 WP_013902255.1 DUF3606 domain-containing protein -
  RTA_RS20795 (Rta_29220) - 3108654..3108896 (+) 243 WP_143762984.1 hypothetical protein -
  RTA_RS14960 (Rta_29230) - 3108967..3110151 (-) 1185 WP_013902257.1 MFS transporter -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44361.15 Da        Isoelectric Point: 9.5212

>NTDB_id=41352 RTA_RS14925 WP_013902249.1 3104082..3105299(+) (pilC) [Ramlibacter tataouinensis TTB310]
MATATATKITEFVFEWEGRDRNGKQVRGETRAAGENQVQASLRRQGVTPLKIRKRKMRSGQKIKPKDIAIFTRQLATMMK
AGVPLLQSFDIVGRGNANASVTKLLNDIRTDVETGTSLSAAFRKFPLYFDNLYCNLVEAGEAAGILEALLDRLAVYMEKT
EAIKSKIKSALMYPISVVVVAFVVVAVIMIFVIPAFKEVFSSFGADLPAPTLFVIAMSEIFVKWWWLIFGGIGGSLYFFM
QAWKRSEKVQMFMDRLMLKVPVFGDLVYKSVIARWTRTLATMFAAGVPLVEALDSVGGASGNSVYQLATEKIQQEVSTGT
SLTAAMTNANVFPSMVLQMTAIGEESGSIDHMLGKAADFYEAEVDDMVAGLSSLMEPMIIVFLGGLIGGIVVAMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=41352 RTA_RS14925 WP_013902249.1 3104082..3105299(+) (pilC) [Ramlibacter tataouinensis TTB310]
ATGGCGACGGCTACCGCAACCAAGATCACCGAGTTCGTCTTCGAGTGGGAGGGCCGCGACCGCAACGGCAAGCAGGTCCG
CGGCGAGACGCGGGCCGCCGGCGAGAACCAGGTCCAGGCGTCGCTGCGCCGCCAGGGCGTCACTCCGCTCAAGATCAGGA
AGCGCAAGATGCGCTCGGGCCAGAAGATCAAGCCCAAGGACATCGCCATCTTCACGCGCCAGCTGGCCACCATGATGAAG
GCGGGCGTGCCGCTGCTGCAGTCCTTCGACATCGTGGGCCGCGGCAACGCCAACGCCAGCGTCACCAAGCTGCTCAACGA
CATCCGCACCGACGTGGAGACCGGCACTTCGCTGTCCGCCGCCTTCCGCAAGTTCCCGCTGTACTTCGACAACCTGTACT
GCAACCTGGTCGAGGCCGGCGAGGCGGCCGGTATCCTGGAGGCGCTGCTGGACCGACTGGCGGTCTACATGGAGAAGACC
GAGGCCATCAAGTCCAAAATCAAGTCGGCGCTGATGTACCCCATCTCCGTGGTGGTGGTGGCCTTCGTCGTGGTGGCGGT
CATCATGATCTTCGTGATCCCGGCGTTCAAGGAGGTGTTCAGTTCTTTCGGCGCGGACCTGCCGGCGCCCACCCTGTTCG
TCATCGCCATGAGCGAGATCTTCGTCAAGTGGTGGTGGCTGATCTTCGGCGGCATCGGCGGCAGCCTCTATTTCTTCATG
CAGGCCTGGAAGCGCAGCGAGAAGGTCCAGATGTTCATGGACCGGCTGATGCTCAAGGTGCCGGTGTTTGGCGACTTGGT
CTACAAGTCGGTCATCGCCCGCTGGACCCGCACCCTGGCGACGATGTTCGCGGCCGGCGTGCCATTGGTGGAGGCCCTCG
ACTCGGTGGGCGGAGCCTCGGGCAACTCGGTCTACCAGCTGGCCACCGAGAAGATCCAGCAGGAGGTCTCCACCGGCACC
AGCCTGACGGCGGCCATGACCAACGCCAACGTCTTCCCCAGCATGGTGCTGCAGATGACCGCCATCGGCGAGGAGTCCGG
CTCGATCGACCACATGCTGGGCAAGGCAGCCGACTTCTACGAGGCCGAGGTCGACGACATGGTGGCCGGCCTGTCCAGCC
TGATGGAGCCCATGATCATCGTCTTCCTCGGTGGCCTGATCGGCGGCATCGTGGTCGCCATGTACCTGCCGATCTTCAAG
CTGGGCCAGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F5Y6E4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.75

98.765

0.56
  pilG Neisseria gonorrhoeae MS11

52.868

99.012

0.523
  pilG Neisseria meningitidis 44/76-A

52.618

99.012

0.521
  pilC Acinetobacter baylyi ADP1

51.256

98.272

0.504
  pilC Acinetobacter baumannii D1279779

50.63

98.025

0.496
  pilC Legionella pneumophila strain ERS1305867

50.253

97.778

0.491
  pilC Vibrio cholerae strain A1552

41.058

98.025

0.402
  pilC Vibrio campbellii strain DS40M4

40.5

98.765

0.4
  pilC Thermus thermophilus HB27

38.5

98.765

0.38

Multiple sequence alignment