Detailed information NTG0041353

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RTA_RS14930
• Genome accession: NC_015677
• Coordinates: 3105299..3106141 (+)
• Length: 280 a.a.
• NCBI ID: WP_013902250.1
• Uniprot ID: F5Y6E5
• Organism: Ramlibacter tataouinensis TTB310
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3100299..3111141

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RTA_RS14905 (Rta_29120)	rplU	3100553..3100864 (-)	312	WP_013902246.1	50S ribosomal protein L21	-
RTA_RS14910 (Rta_29130)	-	3101116..3102045 (+)	930	WP_049871302.1	polyprenyl synthetase family protein	-
RTA_RS14920 (Rta_29140)	pilB	3102305..3104044 (+)	1740	WP_041675628.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RTA_RS14925 (Rta_29150)	pilC	3104082..3105299 (+)	1218	WP_013902249.1	type II secretion system F family protein	Machinery gene
RTA_RS14930 (Rta_29160)	pilD	3105299..3106141 (+)	843	WP_013902250.1	A24 family peptidase	Machinery gene
RTA_RS14935 (Rta_29170)	coaE	3106155..3106754 (+)	600	WP_013902251.1	dephospho-CoA kinase	-
RTA_RS14940 (Rta_29180)	zapD	3106764..3107519 (+)	756	WP_013902252.1	cell division protein ZapD	-
RTA_RS14945 (Rta_29190)	-	3107528..3107740 (+)	213	WP_041675629.1	DNA gyrase inhibitor YacG	-
RTA_RS14950 (Rta_29200)	-	3107787..3108143 (-)	357	WP_013902254.1	hypothetical protein	-
RTA_RS14955 (Rta_29210)	-	3108248..3108445 (-)	198	WP_013902255.1	DUF3606 domain-containing protein	-
RTA_RS20795 (Rta_29220)	-	3108654..3108896 (+)	243	WP_143762984.1	hypothetical protein	-
RTA_RS14960 (Rta_29230)	-	3108967..3110151 (-)	1185	WP_013902257.1	MFS transporter	-
RTA_RS14965 (Rta_29240)	-	3110195..3110524 (-)	330	WP_041675630.1	hypothetical protein	-

Sequence

Protein

• Length: 280 a.a.
• Molecular weight: 29777.32 Da
• Isoelectric Point: 8.0295

>NTDB_id=41353 RTA_RS14930 WP_013902250.1 3105299..3106141(+) (pilD) [Ramlibacter tataouinensis TTB310]
MLVSPGIDAGLAALLGLLVGSFLNVVIHRLPRIMERQWAAECAELNGQPVSATEPLDLMRPRSRCPHCGHAIRWWENIPV
LSWLALRGKCSACRAPISLRYPLVELATAALFGYAVWRWGATASGLAWSGFAAALLALALIDWDTTLLPDDLTLPLLWAG
LIAAALRWSGVPLIDALWGAVGGYLSLWLVYQGFKLLTGKEGMGFGDFKLFAALGAWFGWQALVPMILMASVIGAVVGIA
LKLSSGLREGGYVPFGPFLAGAGLTAMVFGPAAILQAIGL

Nucleotide

• Length: 843 bp

>NTDB_id=41353 RTA_RS14930 WP_013902250.1 3105299..3106141(+) (pilD) [Ramlibacter tataouinensis TTB310]
ATGCTGGTGTCCCCGGGCATCGATGCCGGGCTCGCGGCTCTGCTGGGCCTGCTCGTCGGCAGCTTCCTCAACGTGGTGAT
CCACCGGCTGCCCAGGATAATGGAACGCCAGTGGGCGGCCGAATGCGCCGAGCTCAACGGCCAGCCGGTGTCCGCCACCG
AGCCTTTGGATCTCATGCGTCCGCGCTCGCGTTGTCCCCACTGCGGCCATGCGATCCGCTGGTGGGAGAACATCCCGGTC
CTGAGCTGGCTGGCGCTGCGCGGCAAATGCTCGGCCTGCCGGGCGCCCATCAGCCTGCGCTACCCCTTGGTGGAACTCGC
GACCGCGGCGCTGTTCGGCTATGCCGTGTGGCGCTGGGGCGCGACGGCCAGCGGCCTGGCCTGGAGCGGCTTCGCCGCCG
CCTTGCTCGCGCTGGCGCTGATCGACTGGGACACCACCTTGCTGCCCGACGACCTCACCTTGCCGCTGCTGTGGGCCGGA
CTGATTGCCGCGGCACTGCGCTGGAGCGGCGTGCCGCTCATCGACGCGCTGTGGGGCGCGGTAGGCGGCTACCTGTCGTT
GTGGCTGGTGTACCAGGGCTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGCTTCGGCGATTTCAAGCTGTTCGCCGCGT
TGGGCGCCTGGTTCGGCTGGCAGGCGCTGGTGCCCATGATCCTGATGGCCTCGGTCATCGGCGCTGTGGTGGGCATCGCG
CTCAAGCTCTCCAGCGGACTGCGCGAAGGCGGCTACGTGCCTTTCGGCCCGTTCCTGGCAGGCGCCGGCCTCACGGCCAT
GGTGTTCGGCCCGGCCGCCATCCTGCAGGCCATCGGCCTGTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-119)

• Type IV leader peptidase family (Peptidase_A24) (132-239)

3D structure

• AlphaFold DB: F5Y6E5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.104	95.714	0.518
pilD	Vibrio campbellii strain DS40M4	52.83	94.643	0.5
pilD	Neisseria gonorrhoeae MS11	50.388	92.143	0.464
pilD	Acinetobacter nosocomialis M2	47.328	93.571	0.443
pilD	Acinetobacter baumannii D1279779	47.328	93.571	0.443