Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GSR16_RS17130 Genome accession   NZ_CP047241
Coordinates   3722478..3723698 (-) Length   406 a.a.
NCBI ID   WP_159879531.1    Uniprot ID   -
Organism   Aquitalea denitrificans strain 5YN1-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3717478..3728698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSR16_RS17100 tsaE 3718263..3718748 (+) 486 WP_159879519.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  GSR16_RS17105 - 3718709..3719950 (+) 1242 WP_159879521.1 N-acetylmuramoyl-L-alanine amidase -
  GSR16_RS17110 yacG 3720004..3720201 (-) 198 WP_159879523.1 DNA gyrase inhibitor YacG -
  GSR16_RS17115 zapD 3720207..3720965 (-) 759 WP_159879525.1 cell division protein ZapD -
  GSR16_RS17120 coaE 3721005..3721616 (-) 612 WP_159879527.1 dephospho-CoA kinase -
  GSR16_RS17125 pilD 3721606..3722475 (-) 870 WP_159879529.1 prepilin peptidase Machinery gene
  GSR16_RS17130 pilC 3722478..3723698 (-) 1221 WP_159879531.1 type II secretion system F family protein Machinery gene
  GSR16_RS17135 pilF 3723719..3725431 (-) 1713 WP_159879533.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GSR16_RS17140 - 3725615..3726697 (-) 1083 WP_159879535.1 porin -
  GSR16_RS17145 - 3727039..3728430 (+) 1392 WP_159879538.1 cryptochrome/photolyase family protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44674.54 Da        Isoelectric Point: 9.9425

>NTDB_id=411797 GSR16_RS17130 WP_159879531.1 3722478..3723698(-) (pilC) [Aquitalea denitrificans strain 5YN1-3]
MASVAKKVNPGFIWEWEGKDRSGKVIRGELRAETEAVAKTQLRRQGINVVKVKRRRSGFGRKITEKDITLFTRQLSTMMR
AGVPLLQAFDIAAKGHGNPAVTKMLLEVRADVETGLSLAEAFRKRPLYFDKLFCNLIAAGETGGVLDSLLDKLATYKEKV
MAIKGKIKSAMIYPTAIVATAFIITAVIMIYVIPAFKDLFSSFGADLPAPTLVVIWLSDFFVHWWWLIFGSIFGGIFAFF
YAFKRTPKLQEQFDRILLKLPVIGDIIRKATIARWSRTLSTLFAAGVPLVEALDSVGGASGNQVYSEATKLIQNDVSAGS
SLSYSMQRTGLFPNMVLQMTSIGEESGSLDQMLDKIADFYEEEVDNAVASLSSLLEPAIMVILGVLIGGLVIAMYMPIFK
MGQVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=411797 GSR16_RS17130 WP_159879531.1 3722478..3723698(-) (pilC) [Aquitalea denitrificans strain 5YN1-3]
ATGGCTAGCGTGGCGAAAAAGGTAAACCCTGGGTTTATCTGGGAGTGGGAAGGCAAGGACCGGTCCGGCAAGGTGATCCG
CGGGGAGTTGCGCGCGGAAACCGAGGCCGTTGCCAAGACGCAGCTGCGCCGGCAAGGCATCAATGTGGTCAAGGTCAAGC
GGCGGCGCAGTGGGTTTGGTCGCAAAATCACAGAAAAAGACATCACCCTGTTCACGCGTCAGCTATCGACCATGATGCGG
GCCGGGGTGCCCTTGTTGCAGGCATTTGATATTGCCGCGAAAGGGCATGGCAATCCTGCTGTTACCAAAATGCTGCTGGA
AGTGCGTGCCGATGTGGAAACTGGTCTGTCTTTGGCGGAGGCTTTCCGCAAGCGGCCACTGTACTTCGACAAGCTGTTCT
GCAACCTGATTGCCGCTGGTGAGACCGGTGGTGTGCTGGACTCCCTGCTCGACAAACTGGCCACCTACAAGGAAAAGGTG
ATGGCGATCAAGGGCAAGATCAAGTCCGCCATGATCTACCCGACTGCCATTGTGGCTACCGCCTTCATCATTACCGCAGT
GATCATGATTTATGTAATCCCGGCGTTCAAGGACCTGTTCTCCAGTTTTGGCGCTGATCTGCCCGCGCCGACCCTGGTGG
TGATCTGGCTGTCGGACTTCTTCGTGCACTGGTGGTGGTTGATATTCGGTAGCATTTTTGGCGGTATTTTTGCCTTCTTC
TATGCATTCAAGCGCACACCCAAGCTGCAAGAGCAGTTTGACCGCATCCTGCTCAAGCTGCCGGTGATCGGGGATATCAT
CCGCAAGGCCACCATTGCGCGTTGGTCGCGCACCCTGTCCACCCTGTTTGCTGCGGGGGTGCCGCTGGTGGAGGCGCTGG
ACTCGGTGGGCGGCGCATCCGGTAATCAGGTTTACAGCGAAGCGACCAAGCTGATCCAGAACGATGTCAGCGCCGGTTCC
AGCCTGAGCTATTCCATGCAACGTACCGGTCTGTTTCCCAATATGGTGCTGCAGATGACCTCCATCGGCGAAGAATCTGG
CTCGCTCGATCAGATGCTGGACAAGATTGCCGACTTTTATGAAGAGGAGGTCGACAATGCCGTAGCATCGCTATCCAGCC
TGTTGGAGCCGGCTATCATGGTTATTCTCGGGGTGCTGATTGGTGGCCTGGTTATTGCCATGTACATGCCGATCTTCAAG
ATGGGTCAGGTGGTAGGGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.333

99.754

0.532
  pilC Legionella pneumophila strain ERS1305867

53.218

99.507

0.53
  pilG Neisseria meningitidis 44/76-A

53.827

96.552

0.52
  pilG Neisseria gonorrhoeae MS11

53.964

96.305

0.52
  pilC Acinetobacter baylyi ADP1

49.507

100

0.495
  pilC Acinetobacter baumannii D1279779

50.126

97.783

0.49
  pilC Vibrio campbellii strain DS40M4

40.05

97.783

0.392
  pilC Vibrio cholerae strain A1552

37.75

98.522

0.372
  pilC Thermus thermophilus HB27

36.842

98.276

0.362

Multiple sequence alignment