Detailed information NTG0411796

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GSR16_RS17125
• Genome accession: NZ_CP047241
• Coordinates: 3721606..3722475 (-)
• Length: 289 a.a.
• NCBI ID: WP_159879529.1
• Uniprot ID: -
• Organism: Aquitalea denitrificans strain 5YN1-3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3716606..3727475

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GSR16_RS17090	-	3716633..3717097 (+)	465	WP_159879505.1	GNAT family N-acetyltransferase	-
GSR16_RS17095	queG	3717168..3718256 (-)	1089	WP_159879507.1	tRNA epoxyqueuosine(34) reductase QueG	-
GSR16_RS17100	tsaE	3718263..3718748 (+)	486	WP_159879519.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	-
GSR16_RS17105	-	3718709..3719950 (+)	1242	WP_159879521.1	N-acetylmuramoyl-L-alanine amidase	-
GSR16_RS17110	yacG	3720004..3720201 (-)	198	WP_159879523.1	DNA gyrase inhibitor YacG	-
GSR16_RS17115	zapD	3720207..3720965 (-)	759	WP_159879525.1	cell division protein ZapD	-
GSR16_RS17120	coaE	3721005..3721616 (-)	612	WP_159879527.1	dephospho-CoA kinase	-
GSR16_RS17125	pilD	3721606..3722475 (-)	870	WP_159879529.1	prepilin peptidase	Machinery gene
GSR16_RS17130	pilC	3722478..3723698 (-)	1221	WP_159879531.1	type II secretion system F family protein	Machinery gene
GSR16_RS17135	pilF	3723719..3725431 (-)	1713	WP_159879533.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GSR16_RS17140	-	3725615..3726697 (-)	1083	WP_159879535.1	porin	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31831.96 Da
• Isoelectric Point: 7.7247

>NTDB_id=411796 GSR16_RS17125 WP_159879529.1 3721606..3722475(-) (pilD) [Aquitalea denitrificans strain 5YN1-3]
MTEMASVLANNAGWLIAVVLLFGLLVGSFLNVVIHRLPIMMKHGWQRECDAYLGRELTSQGRYNLVVPASHCPACKTEVK
PWQNIPLLSYVLLRGRCQHCHAPISMRYPLVELLTSLLFALLAWHFGWSVQLAGYLALTAVLIALAFIDADTQLLPDDLT
LPLLWGGLLFNLWTGTVALDDAVLGAVAGYLSLWLVYWLFRLLTGKEGMGYGDFKLLAAFGAWLGWSMLPLIILLSSLVG
AIVGVVMILLARLGRGQPLPFGPYLAAAGWIALLWGKDIVSWYLGSYVH

Nucleotide

• Length: 870 bp

>NTDB_id=411796 GSR16_RS17125 WP_159879529.1 3721606..3722475(-) (pilD) [Aquitalea denitrificans strain 5YN1-3]
ATGACGGAAATGGCAAGTGTGCTGGCGAACAATGCCGGCTGGTTGATTGCGGTGGTGCTGCTGTTTGGTTTACTGGTTGG
CAGCTTTCTGAATGTGGTGATTCATCGCCTGCCCATCATGATGAAGCATGGCTGGCAGCGGGAGTGCGATGCTTATCTTG
GCCGGGAGCTTACAAGCCAGGGACGATACAACCTGGTGGTGCCGGCATCACATTGCCCAGCTTGCAAAACGGAAGTAAAG
CCCTGGCAGAATATTCCCCTGCTGAGCTATGTCCTGTTGCGTGGTCGCTGTCAGCATTGCCATGCGCCAATCAGCATGCG
CTACCCATTGGTGGAACTGCTTACTAGCCTGCTGTTTGCCCTGCTGGCCTGGCATTTTGGCTGGAGTGTGCAATTGGCAG
GCTATCTGGCACTGACGGCGGTCCTGATTGCCCTGGCTTTCATTGATGCGGATACCCAGTTGCTGCCGGATGACCTGACT
CTGCCTTTGCTGTGGGGCGGCCTGCTGTTCAACCTATGGACCGGAACGGTTGCGCTGGATGATGCCGTGCTGGGGGCTGT
GGCCGGCTATCTCAGTTTGTGGCTGGTTTACTGGCTGTTCAGGCTGCTTACCGGAAAAGAAGGCATGGGCTATGGTGACT
TCAAGCTCCTGGCCGCATTTGGTGCCTGGCTCGGCTGGAGCATGCTGCCGCTGATCATTCTGCTGTCCTCCCTGGTTGGT
GCCATTGTCGGCGTGGTGATGATTTTGCTGGCACGGCTTGGCCGTGGTCAGCCACTGCCTTTCGGCCCTTATCTGGCTGC
GGCAGGCTGGATCGCCCTGCTGTGGGGCAAGGATATTGTCAGCTGGTATCTGGGTAGTTATGTCCATTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	56.272	96.54	0.543
pilD	Vibrio campbellii strain DS40M4	53.791	95.848	0.516
pilD	Acinetobacter baumannii D1279779	51.568	99.308	0.512
pilD	Acinetobacter nosocomialis M2	51.568	99.308	0.512
pilD	Neisseria gonorrhoeae MS11	53.285	94.81	0.505