Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GQS55_RS01910 Genome accession   NZ_CP047130
Coordinates   449938..451185 (-) Length   415 a.a.
NCBI ID   WP_159817430.1    Uniprot ID   -
Organism   Colwellia sp. 20A7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 444938..456185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQS55_RS01885 mutT 446336..446761 (+) 426 WP_159817420.1 8-oxo-dGTP diphosphatase MutT -
  GQS55_RS01890 yacG 446870..447106 (-) 237 WP_159817422.1 DNA gyrase inhibitor YacG -
  GQS55_RS01895 zapD 447200..447946 (-) 747 WP_159817424.1 cell division protein ZapD -
  GQS55_RS01900 coaE 448086..448697 (-) 612 WP_159817426.1 dephospho-CoA kinase -
  GQS55_RS01905 pilD 448783..449667 (-) 885 WP_159817428.1 A24 family peptidase Machinery gene
  GQS55_RS01910 pilC 449938..451185 (-) 1248 WP_159817430.1 type II secretion system F family protein Machinery gene
  GQS55_RS01915 pilB 451228..452931 (-) 1704 WP_159817432.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GQS55_RS01920 - 453095..453781 (+) 687 WP_159817434.1 transposase -
  GQS55_RS01925 - 453960..454418 (-) 459 WP_328698886.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  GQS55_RS01930 rplM 455109..455537 (+) 429 WP_159817436.1 50S ribosomal protein L13 -
  GQS55_RS01935 rpsI 455541..455933 (+) 393 WP_114326795.1 30S ribosomal protein S9 -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 44792.92 Da        Isoelectric Point: 9.6472

>NTDB_id=410831 GQS55_RS01910 WP_159817430.1 449938..451185(-) (pilC) [Colwellia sp. 20A7]
MATAVAKKKAPKVKVLDVFTWQGVNRKGKKINGELQANNIIELKAQLRKQGITPSKVKKKAKPLFGLGGDKAITPGDIAI
ISRQIATMLGAGVPLVQTIEMIGKGHNNGKMQKLLGEITHKLSSGIPLSDCLRDHPRQFDDLYCDLVASGEQSGSLETIY
DRIATYKEKAEALKAKIKKAMTYPIAVLVIAAVVTSILLIFVVPVFQEIFAGFGAELPGFTLFVVGISDFMVAYWHLGLG
AIFAAIFLFKRAHRNSLKLRDQVDRQILKLPVIGDLLEKAAVARYARTLSTTFAAGVPLIDALESAAGAAGNAVFRDAIL
EVRTEVTSGMQMNLAMRNSNIFPDMVIQMVAIGEESGAVDDMLSKVANVYEAEVDNAVDNLTALLEPMIMAVLGVVIGGL
IIAMYLPIFQIGMIV

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=410831 GQS55_RS01910 WP_159817430.1 449938..451185(-) (pilC) [Colwellia sp. 20A7]
ATGGCAACAGCAGTAGCAAAAAAAAAGGCCCCTAAGGTTAAAGTGTTAGATGTTTTTACTTGGCAAGGCGTTAACCGCAA
GGGTAAAAAAATTAACGGTGAGCTGCAAGCAAATAATATTATCGAATTAAAAGCACAGTTACGTAAGCAAGGTATAACAC
CTAGCAAGGTAAAGAAAAAGGCTAAACCTCTGTTTGGTTTAGGCGGTGATAAAGCCATTACACCTGGTGATATTGCGATA
ATATCGAGACAAATTGCTACTATGTTGGGTGCTGGTGTACCTTTAGTACAAACCATTGAAATGATTGGAAAAGGTCATAA
CAATGGTAAAATGCAAAAATTACTCGGTGAAATAACTCATAAACTATCATCAGGTATTCCGTTATCTGACTGCTTACGCG
ATCACCCAAGGCAATTTGATGATCTGTATTGTGATTTAGTCGCTTCAGGCGAACAATCTGGTTCGTTAGAAACCATTTAT
GATCGTATTGCCACCTACAAAGAAAAAGCTGAAGCATTAAAAGCAAAAATAAAAAAAGCGATGACCTACCCTATCGCCGT
TTTAGTTATTGCCGCCGTTGTTACCTCTATTCTATTAATTTTTGTGGTACCTGTTTTCCAAGAAATCTTTGCCGGCTTTG
GCGCTGAATTACCTGGTTTTACTTTATTTGTTGTTGGTATTTCAGACTTTATGGTCGCTTATTGGCATTTAGGTTTAGGG
GCTATTTTCGCTGCTATCTTTTTATTCAAACGTGCCCATCGAAATAGTTTAAAATTACGGGATCAGGTTGATAGACAAAT
TCTAAAGCTACCTGTGATTGGTGATTTACTTGAAAAGGCCGCTGTAGCTCGTTATGCCCGAACACTTTCTACCACCTTTG
CCGCCGGTGTACCGCTAATAGATGCACTAGAATCAGCGGCTGGCGCTGCCGGTAATGCCGTATTCCGTGATGCTATTTTA
GAGGTGCGCACAGAGGTTACTTCAGGTATGCAAATGAACCTAGCCATGCGTAATAGTAATATATTCCCTGATATGGTTAT
TCAAATGGTTGCCATTGGTGAAGAGTCTGGCGCGGTTGATGATATGTTATCAAAAGTTGCTAATGTCTATGAAGCCGAAG
TAGACAATGCCGTTGACAATTTAACAGCATTATTAGAGCCAATGATTATGGCTGTATTAGGGGTAGTTATTGGCGGTTTA
ATTATTGCTATGTATTTGCCAATATTCCAAATTGGTATGATTGTTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(82-204)

Type II secretion system (T2SS), protein F (T2SSF)

(286-407)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

60.553

95.904

0.581
  pilC Acinetobacter baylyi ADP1

54.68

97.831

0.535
  pilC Acinetobacter baumannii D1279779

54.455

97.349

0.53
  pilC Legionella pneumophila strain ERS1305867

53.553

94.94

0.508
  pilC Vibrio cholerae strain A1552

45.658

97.108

0.443
  pilG Neisseria meningitidis 44/76-A

43.641

96.627

0.422
  pilG Neisseria gonorrhoeae MS11

43.641

96.627

0.422
  pilC Vibrio campbellii strain DS40M4

42.365

97.831

0.414
  pilC Thermus thermophilus HB27

37.871

97.349

0.369

Multiple sequence alignment