Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GQ677_RS10060 Genome accession   NZ_CP047120
Coordinates   1977456..1977851 (-) Length   131 a.a.
NCBI ID   WP_003053955.1    Uniprot ID   A0AAE9R0G1
Organism   Streptococcus pyogenes strain 1085     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1972456..1982851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQ677_RS10040 (GQ677_10040) rofA 1973059..1974552 (+) 1494 WP_159330918.1 transcriptional regulator RofA -
  GQ677_RS10045 (GQ677_10045) hslO 1974699..1975571 (+) 873 WP_159330919.1 Hsp33 family molecular chaperone HslO -
  GQ677_RS10050 (GQ677_10050) dusB 1975558..1976535 (+) 978 WP_002987812.1 tRNA dihydrouridine synthase DusB -
  GQ677_RS10055 (GQ677_10055) - 1976555..1977196 (+) 642 WP_010921807.1 deoxynucleoside kinase -
  GQ677_RS10060 (GQ677_10060) ssbA 1977456..1977851 (-) 396 WP_003053955.1 single-stranded DNA-binding protein Machinery gene
  GQ677_RS10065 (GQ677_10065) ytpR 1978003..1978629 (-) 627 WP_011285356.1 YtpR family tRNA-binding protein -
  GQ677_RS10070 (GQ677_10070) - 1978647..1978964 (-) 318 WP_011285355.1 thioredoxin family protein -
  GQ677_RS10075 (GQ677_10075) - 1978961..1979245 (-) 285 WP_002992749.1 DUF4651 domain-containing protein -
  GQ677_RS10080 (GQ677_10080) pepA 1979710..1980777 (+) 1068 WP_136263717.1 glutamyl aminopeptidase -
  GQ677_RS10085 (GQ677_10085) proC 1980825..1981595 (+) 771 WP_136274084.1 pyrroline-5-carboxylate reductase -
  GQ677_RS10090 (GQ677_10090) - 1981678..1981986 (-) 309 WP_010921804.1 hypothetical protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14787.96 Da        Isoelectric Point: 8.0157

>NTDB_id=410764 GQ677_RS10060 WP_003053955.1 1977456..1977851(-) (ssbA) [Streptococcus pyogenes strain 1085]
MYNKVIAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLMSIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVTNDLVDLVLEEDTLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=410764 GQ677_RS10060 WP_003053955.1 1977456..1977851(-) (ssbA) [Streptococcus pyogenes strain 1085]
ATGTATAATAAAGTGATAGCAATCGGTCGTTTGGTAGCTAAACCAGAATTGGTAAAAACAGCTACGGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCTGGAGAGCGAGAAGCTGATTTTATTTCAGTTGTTGTTT
GGGGAAAGTTAGCAGAAACTCTGGTTTCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGATGGCGAACTTAGGACCCGC
AAGTATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTTCTCTGCCAATCATTTCAACTGCTTGAAAGTCGTGCTCA
GCGCGCTATGAGAGAAAATAATGTTACTAATGATCTAGTTGATTTAGTCTTAGAAGAAGATACTCTTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

74.046

100

0.74
  ssbB Streptococcus sobrinus strain NIDR 6715-7

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus mitis NCTC 12261

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.229

100

0.702
  ssbB/cilA Streptococcus mitis SK321

69.466

100

0.695
  ssbB Lactococcus lactis subsp. cremoris KW2

62.281

87.023

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397

Multiple sequence alignment