Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ERJ70_RS19085 Genome accession   NZ_CP046956
Coordinates   3928407..3928877 (-) Length   156 a.a.
NCBI ID   WP_209366301.1    Uniprot ID   -
Organism   Sediminibacillus dalangtanensis strain DP4-553-S     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3923407..3933877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ERJ70_RS19065 (ERJ70_18945) - 3924711..3925865 (-) 1155 WP_209366298.1 alanine--glyoxylate aminotransferase family protein -
  ERJ70_RS19070 (ERJ70_18950) - 3926401..3926859 (-) 459 WP_209366299.1 Hsp20/alpha crystallin family protein -
  ERJ70_RS19075 (ERJ70_18955) - 3927030..3927533 (-) 504 WP_209366300.1 hypothetical protein -
  ERJ70_RS19080 (ERJ70_18960) rpsR 3928124..3928354 (-) 231 WP_026568902.1 30S ribosomal protein S18 -
  ERJ70_RS19085 (ERJ70_18965) ssbA 3928407..3928877 (-) 471 WP_209366301.1 single-stranded DNA-binding protein Machinery gene
  ERJ70_RS19090 (ERJ70_18970) rpsF 3928890..3929180 (-) 291 WP_209366302.1 30S ribosomal protein S6 -
  ERJ70_RS19095 (ERJ70_18975) ychF 3929344..3930444 (-) 1101 WP_209366303.1 redox-regulated ATPase YchF -
  ERJ70_RS19100 (ERJ70_18980) - 3931183..3931386 (-) 204 WP_209366304.1 DUF951 domain-containing protein -
  ERJ70_RS19105 (ERJ70_18985) - 3931390..3932334 (-) 945 WP_245208071.1 mechanosensitive ion channel family protein -
  ERJ70_RS19110 (ERJ70_18990) - 3932331..3933350 (-) 1020 WP_209366305.1 hypothetical protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17230.83 Da        Isoelectric Point: 4.4762

>NTDB_id=409708 ERJ70_RS19085 WP_209366301.1 3928407..3928877(-) (ssbA) [Sediminibacillus dalangtanensis strain DP4-553-S]
MLNRVVLVGRLTKDPDLRYTPNGVAVANFTLAVNRPFSNQQGNREADFINCVVWRRAAENLANFMSKGSLVGVDGRVQTR
NFEGQDGKRVFVTEVVADTVQFLETKGSSQGGGQGSPGYQQNQNQSNNNDFSRQNEEDPFSNNGEPIDISDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=409708 ERJ70_RS19085 WP_209366301.1 3928407..3928877(-) (ssbA) [Sediminibacillus dalangtanensis strain DP4-553-S]
ATGTTAAATCGTGTCGTACTTGTCGGCAGGTTGACGAAGGATCCGGACTTACGCTATACACCAAATGGAGTAGCAGTGGC
TAATTTCACATTAGCTGTCAATCGACCTTTTTCTAACCAGCAAGGAAACAGGGAAGCTGATTTTATCAACTGTGTAGTAT
GGAGACGTGCCGCTGAGAACCTCGCCAACTTTATGAGTAAAGGAAGCTTGGTCGGTGTAGACGGACGTGTACAAACACGC
AATTTTGAAGGTCAGGATGGAAAAAGGGTATTCGTCACCGAAGTAGTGGCCGATACTGTACAATTCCTGGAAACAAAAGG
ATCTTCCCAAGGTGGAGGACAAGGCTCACCAGGATATCAACAGAATCAGAACCAATCGAACAACAACGATTTTTCCAGAC
AAAATGAAGAGGACCCATTCAGCAATAATGGGGAACCAATCGATATATCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.705
  ssb Latilactobacillus sakei subsp. sakei 23K

56.14

100

0.615
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

67.949

0.423
  ssb Glaesserella parasuis strain SC1401

33.898

100

0.385
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.143

89.744

0.378
  ssbB/cilA Streptococcus pneumoniae Rx1

41.429

89.744

0.372
  ssbB/cilA Streptococcus pneumoniae D39

41.429

89.744

0.372
  ssbB/cilA Streptococcus pneumoniae R6

41.429

89.744

0.372
  ssbB/cilA Streptococcus mitis SK321

41.429

89.744

0.372
  ssbB Streptococcus sobrinus strain NIDR 6715-7

40.714

89.744

0.365
  ssbB/cilA Streptococcus mitis NCTC 12261

40.714

89.744

0.365

Multiple sequence alignment