Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GO174_RS10670 Genome accession   NZ_CP046857
Coordinates   2267348..2268574 (+) Length   408 a.a.
NCBI ID   WP_158125405.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 2015AW-0233     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2262348..2273574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO174_RS10645 fldB 2262846..2263367 (+) 522 WP_020430452.1 flavodoxin FldB -
  GO174_RS10650 ampD 2263372..2263923 (-) 552 WP_158125401.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  GO174_RS10655 nadC 2264076..2264963 (+) 888 WP_158125402.1 carboxylating nicotinate-nucleotide diphosphorylase -
  GO174_RS10660 pilA 2265195..2265617 (+) 423 WP_158125403.1 pilin Machinery gene
  GO174_RS10665 pilB 2265624..2267312 (+) 1689 WP_158125404.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GO174_RS10670 pilC 2267348..2268574 (+) 1227 WP_158125405.1 type II secretion system F family protein Machinery gene
  GO174_RS10675 pilD 2268626..2269495 (+) 870 WP_047459100.1 A24 family peptidase Machinery gene
  GO174_RS10680 coaE 2269498..2270106 (+) 609 WP_158125406.1 dephospho-CoA kinase -
  GO174_RS10685 zapD 2270139..2270879 (+) 741 WP_020332196.1 cell division protein ZapD -
  GO174_RS10690 yacG 2270934..2271131 (+) 198 WP_020332195.1 DNA gyrase inhibitor YacG -
  GO174_RS10695 parC 2271182..2273455 (-) 2274 WP_020332194.1 DNA topoisomerase IV subunit A -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44670.91 Da        Isoelectric Point: 10.5318

>NTDB_id=409000 GO174_RS10670 WP_158125405.1 2267348..2268574(+) (pilC) [Vibrio fluvialis strain 2015AW-0233]
MKPTKGPELKNYRWKGVNSTGKKVAGQTLAISEIEVRDKLKEQHIQVKKIKKGSVSVLTRLTNRVKTKDITILTRQLATM
LTTGVPIVQALKLVGDNHRKAEMKSILAQITKGVEAGTPISKAMRTASTHFDALYVDLIQTGEQSGNLAEVFERLATYRE
KSEQLRAKVIKALIYPSMVILVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQILKLSHGVQAYSAGAFIASLSLVFG
IKAARKKSFVVRLKTSQLGLRFPIIGGVLAKAAIAKFSRTLATSFSAGIPILASLKTTAKTAGNVHFETAIQDVHRHTAA
GMPMYIAMRNTQAFPEMVLQMVMIGEESGKLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGIVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=409000 GO174_RS10670 WP_158125405.1 2267348..2268574(+) (pilC) [Vibrio fluvialis strain 2015AW-0233]
ATGAAACCGACCAAAGGCCCTGAGTTAAAAAACTATCGCTGGAAAGGCGTCAACAGCACTGGCAAAAAAGTCGCGGGACA
GACACTGGCTATCAGTGAAATAGAAGTCCGCGACAAACTGAAAGAACAGCACATTCAGGTTAAGAAGATCAAAAAAGGCA
GCGTGTCGGTTCTGACTCGTCTCACCAATCGGGTCAAAACTAAAGACATCACCATCCTAACCCGCCAGCTTGCCACCATG
CTGACCACCGGAGTACCGATTGTGCAGGCACTTAAATTGGTCGGCGATAATCATCGCAAAGCCGAGATGAAATCGATTCT
GGCGCAAATTACCAAAGGCGTCGAAGCCGGTACGCCGATTTCCAAAGCGATGCGCACCGCCAGCACTCACTTTGACGCGT
TGTACGTCGACTTAATTCAGACTGGCGAGCAATCCGGTAATCTTGCCGAAGTCTTTGAACGCCTTGCCACCTATCGGGAA
AAAAGCGAACAACTGCGCGCGAAAGTAATCAAAGCGCTGATCTATCCCAGCATGGTCATTCTGGTGGCACTCGGCGTCTC
CTATTTGATGCTGACGATGGTCATTCCAGAGTTCGAAAGTATGTTCAAGGGTTTTGGGGCTGAACTGCCTTGGTTTACTC
AGCAGATCCTCAAGTTGTCGCATGGGGTACAAGCCTACAGTGCGGGGGCGTTCATCGCGTCATTGAGCTTGGTGTTTGGC
ATCAAAGCGGCGCGGAAAAAATCCTTCGTGGTCCGTCTTAAAACCAGCCAGCTCGGCCTGCGTTTTCCCATCATTGGCGG
TGTGCTTGCCAAAGCCGCAATTGCCAAATTCAGCCGCACTCTGGCGACCAGCTTCAGTGCGGGAATTCCGATACTCGCCA
GCCTCAAAACCACCGCTAAAACGGCAGGTAACGTGCATTTTGAAACCGCCATTCAGGATGTTCACCGCCATACGGCGGCA
GGGATGCCGATGTATATTGCAATGCGCAACACACAAGCCTTTCCGGAAATGGTGTTGCAAATGGTGATGATCGGCGAGGA
GTCCGGCAAGCTCGACGACATGCTCAATAAAGTCGCCACCATCTATGAGTTTGAAGTCGACAACACCGTCGACAATCTGG
GCAAAATTCTTGAACCGCTGATTATCGTATTTTTGGGCATTGTGGTCGGTGGATTGGTGGTGGCGATGTACCTGCCAATC
TTTAACTTAATGAGTGTATTAGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

87.255

100

0.873
  pilC Vibrio campbellii strain DS40M4

72.346

99.265

0.718
  pilC Acinetobacter baumannii D1279779

41.667

100

0.417
  pilC Legionella pneumophila strain ERS1305867

41.103

97.794

0.402
  pilC Acinetobacter baylyi ADP1

41.31

97.304

0.402
  pilC Pseudomonas stutzeri DSM 10701

39.899

97.059

0.387
  pilG Neisseria gonorrhoeae MS11

39.599

97.794

0.387
  pilG Neisseria meningitidis 44/76-A

39.098

97.794

0.382

Multiple sequence alignment