Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   GO174_RS10675 Genome accession   NZ_CP046857
Coordinates   2268626..2269495 (+) Length   289 a.a.
NCBI ID   WP_047459100.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 2015AW-0233     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2263626..2274495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO174_RS10655 nadC 2264076..2264963 (+) 888 WP_158125402.1 carboxylating nicotinate-nucleotide diphosphorylase -
  GO174_RS10660 pilA 2265195..2265617 (+) 423 WP_158125403.1 pilin Machinery gene
  GO174_RS10665 pilB 2265624..2267312 (+) 1689 WP_158125404.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GO174_RS10670 pilC 2267348..2268574 (+) 1227 WP_158125405.1 type II secretion system F family protein Machinery gene
  GO174_RS10675 pilD 2268626..2269495 (+) 870 WP_047459100.1 A24 family peptidase Machinery gene
  GO174_RS10680 coaE 2269498..2270106 (+) 609 WP_158125406.1 dephospho-CoA kinase -
  GO174_RS10685 zapD 2270139..2270879 (+) 741 WP_020332196.1 cell division protein ZapD -
  GO174_RS10690 yacG 2270934..2271131 (+) 198 WP_020332195.1 DNA gyrase inhibitor YacG -
  GO174_RS10695 parC 2271182..2273455 (-) 2274 WP_020332194.1 DNA topoisomerase IV subunit A -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 32258.31 Da        Isoelectric Point: 6.4655

>NTDB_id=409001 GO174_RS10675 WP_047459100.1 2268626..2269495(+) (pilD) [Vibrio fluvialis strain 2015AW-0233]
MDIFNFYPWLFPTLATVLGLIIGSFLNVVIYRLPKIMEREWRQECAESFPEYHIEPPQGILTLSTPRSTCPHCDTPIRVI
DNIPVLSWLLLRGKCSNCQGPISARYPLIELLTASCSLLIALQFGFSWFAVAMLFFTYTLIAATFIDFDTMLLPDQLTLP
LLWAGIALALAGISPISLQDAVIGAIAGYLSLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPIIILMSSLVGL
VFGLIQLRLQKRGIDKAFPFGPYLAIAGWLSLLFGHDIAGWYFHSVLGF

Nucleotide


Download         Length: 870 bp        

>NTDB_id=409001 GO174_RS10675 WP_047459100.1 2268626..2269495(+) (pilD) [Vibrio fluvialis strain 2015AW-0233]
ATGGACATTTTTAATTTTTACCCCTGGCTGTTTCCTACGCTGGCGACAGTGCTGGGGTTAATTATCGGCAGTTTCCTCAA
TGTGGTGATTTATCGCCTGCCGAAAATCATGGAGCGCGAGTGGCGTCAGGAGTGTGCGGAATCCTTTCCCGAGTATCATA
TTGAACCGCCTCAGGGCATTTTAACGCTGAGCACGCCACGTTCCACCTGCCCGCATTGCGATACGCCGATCCGGGTTATC
GACAACATTCCGGTACTGAGCTGGCTGTTGCTGCGTGGTAAATGCTCGAATTGTCAGGGCCCTATCAGCGCGCGTTATCC
ACTGATTGAACTGCTGACGGCTTCATGCAGCCTCTTGATTGCGCTGCAATTTGGTTTTAGCTGGTTTGCCGTTGCCATGC
TGTTCTTTACCTATACGCTGATTGCGGCAACCTTCATTGATTTCGATACGATGCTGCTGCCAGATCAGCTTACTCTGCCC
CTGCTCTGGGCAGGTATTGCACTGGCATTGGCGGGCATCAGCCCGATTTCGCTACAAGATGCGGTGATTGGTGCGATAGC
GGGGTATCTGTCGTTATGGTCGGTGTACTGGCTGTTTAAGCTACTGACAGGCAAAGAAGGCATGGGCTATGGCGACTTTA
AGCTGTTAGCGGCTCTCGGTGCCTGGCTGGGATGGCAGCAACTACCGATCATCATTCTGATGTCATCTCTAGTTGGACTG
GTGTTCGGCCTCATTCAACTGCGTCTGCAAAAGCGCGGCATTGATAAAGCATTTCCCTTCGGGCCTTATCTGGCGATTGC
AGGCTGGCTGTCCCTGCTGTTTGGTCATGACATTGCGGGTTGGTATTTTCATTCGGTATTAGGATTCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(135-244)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

78.819

99.654

0.785
  pilD Vibrio campbellii strain DS40M4

78.125

99.654

0.779
  pilD Acinetobacter baumannii D1279779

53.285

94.81

0.505
  pilD Acinetobacter nosocomialis M2

52.92

94.81

0.502
  pilD Neisseria gonorrhoeae MS11

50.929

93.08

0.474

Multiple sequence alignment