Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   GO175_RS04950 Genome accession   NZ_CP046855
Coordinates   924694..925809 (+) Length   371 a.a.
NCBI ID   WP_047461837.1    Uniprot ID   -
Organism   Vibrio fluvialis strain F8658     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 919694..930809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO175_RS04930 rsmB 920627..921907 (-) 1281 WP_154183783.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  GO175_RS04935 fmt 921958..922905 (-) 948 WP_154183781.1 methionyl-tRNA formyltransferase -
  GO175_RS04940 def 922924..923436 (-) 513 WP_020332568.1 peptide deformylase -
  GO175_RS04945 - 923576..924694 (+) 1119 WP_154183779.1 LysM peptidoglycan-binding domain-containing protein -
  GO175_RS04950 dprA 924694..925809 (+) 1116 WP_047461837.1 DNA-processing protein DprA Machinery gene
  GO175_RS04955 - 925812..926288 (+) 477 WP_020332565.1 DUF494 family protein -
  GO175_RS04960 - 926319..926906 (+) 588 WP_024374494.1 type I DNA topoisomerase -
  GO175_RS04965 - 926940..928073 (-) 1134 WP_020332563.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  GO175_RS04970 purE 928077..928562 (-) 486 WP_154183777.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  GO175_RS04975 - 928760..929317 (+) 558 WP_154183775.1 L-threonylcarbamoyladenylate synthase -
  GO175_RS04980 hemF 929337..930251 (+) 915 WP_020332560.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40570.05 Da        Isoelectric Point: 6.1277

>NTDB_id=408945 GO175_RS04950 WP_047461837.1 924694..925809(+) (dprA) [Vibrio fluvialis strain F8658]
MLERDLAAWLAFSFTPQLGIRTLQRLASRYALSDLKQHLNRDGLAVGLKDNQIQYLQRQADQDVDACLRWSEQADNRHIL
TPFHAYYPSLLTEIAAAPPVLFVEGRLEALRAPQIAIVGSRNASIDSQQIAHQFATQLVEHGLVVTSGLALGIDGYAHDG
ALKAGGETIAVLGSGLECIYPARHRALAGRIVDRGALVSEFRPDAKPRPDHFPRRNRIISGLSLGVLVVEAAEKSGSLIT
ARYAAEQSREVFVVPGSIRNPNSLGSNQLIRQGACLVQHVDHILEEVSSLMDWSRNQSQPEQTELFSGTYNEEELPFPEL
LANVGGEATPVDILANRTNIPVQDVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=408945 GO175_RS04950 WP_047461837.1 924694..925809(+) (dprA) [Vibrio fluvialis strain F8658]
ATGCTCGAACGCGATCTGGCTGCTTGGTTGGCTTTCAGTTTTACTCCTCAACTCGGTATCCGAACATTGCAGCGTTTAGC
CAGTCGTTACGCGCTGTCTGACCTCAAACAACACCTGAATCGTGACGGCTTGGCCGTAGGACTGAAAGACAACCAGATTC
AGTATTTGCAGCGGCAGGCCGATCAAGACGTCGATGCCTGCCTGCGTTGGAGTGAGCAGGCTGATAATCGCCATATTCTG
ACGCCGTTTCATGCGTACTATCCCTCGTTATTGACCGAAATCGCCGCCGCTCCGCCAGTGCTATTTGTGGAGGGGCGGCT
TGAAGCGCTGCGTGCGCCGCAAATTGCTATTGTCGGCAGTCGCAACGCCAGTATCGACAGTCAGCAAATTGCTCATCAGT
TTGCCACGCAATTGGTCGAACACGGTTTGGTGGTCACCAGTGGTCTGGCGCTTGGTATTGATGGCTACGCACATGATGGC
GCACTCAAAGCGGGTGGGGAAACTATTGCGGTGCTGGGCTCGGGGCTGGAATGTATTTATCCGGCTCGCCATCGCGCGTT
GGCGGGGCGTATTGTTGACAGAGGCGCCTTGGTGTCGGAATTTCGCCCTGATGCCAAGCCTCGACCTGATCATTTTCCGC
GTCGTAATCGTATTATCAGTGGGTTGTCATTGGGCGTTCTGGTGGTGGAAGCGGCGGAAAAAAGTGGCTCGCTCATCACC
GCGCGTTATGCCGCCGAACAGAGCCGAGAGGTGTTTGTCGTGCCGGGCTCAATTCGCAACCCGAATAGCCTCGGCAGTAA
CCAGTTGATTCGACAAGGGGCGTGTTTGGTACAACATGTCGATCATATTCTCGAAGAAGTCAGCAGTTTGATGGACTGGA
GCCGAAATCAGTCACAACCTGAGCAGACAGAACTTTTTTCTGGCACATATAACGAAGAAGAATTGCCATTTCCCGAGCTG
TTAGCTAACGTAGGGGGAGAGGCTACACCAGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAGGATGTCATGAT
GCAGCTCCTGGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGTAAAGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(319-364)

DNA recombination-mediator protein A (DNA_processg_A)

(75-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

64.69

100

0.647
  dprA Vibrio campbellii strain DS40M4

64.85

98.922

0.642
  dprA Glaesserella parasuis strain SC1401

47.074

100

0.477
  dprA Legionella pneumophila strain ERS1305867

43.681

98.113

0.429
  dprA Neisseria meningitidis strain C311

37.688

100

0.404
  dprA Neisseria meningitidis MC58

37.688

100

0.404
  dprA Haemophilus influenzae Rd KW20

44.012

90.027

0.396
  dprA Neisseria gonorrhoeae MS11

36.181

100

0.388
  dprA Acinetobacter baumannii D1279779

42.216

90.027

0.38
  dprA Neisseria gonorrhoeae strain FA1090

35.696

100

0.38
  dprA Acinetobacter baylyi ADP1

41.916

90.027

0.377

Multiple sequence alignment