Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   DELCS14_RS05605 Genome accession   NC_015563
Coordinates   1270493..1271710 (-) Length   405 a.a.
NCBI ID   WP_013800819.1    Uniprot ID   -
Organism   Delftia sp. Cs1-4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1265493..1276710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DELCS14_RS05575 (DelCs14_1115) - 1266321..1267277 (+) 957 WP_013800815.1 ATP-binding protein -
  DELCS14_RS05580 (DelCs14_1116) - 1267328..1267846 (+) 519 WP_012207292.1 NUDIX domain-containing protein -
  DELCS14_RS05585 (DelCs14_1117) - 1267857..1268087 (-) 231 WP_085929076.1 DNA gyrase inhibitor YacG -
  DELCS14_RS05590 (DelCs14_1118) zapD 1268105..1268860 (-) 756 WP_012207290.1 cell division protein ZapD -
  DELCS14_RS05595 (DelCs14_1119) coaE 1268950..1269594 (-) 645 WP_013800817.1 dephospho-CoA kinase -
  DELCS14_RS05600 (DelCs14_1120) pilD 1269609..1270493 (-) 885 WP_013800818.1 A24 family peptidase Machinery gene
  DELCS14_RS05605 (DelCs14_1121) pilC 1270493..1271710 (-) 1218 WP_013800819.1 type II secretion system F family protein Machinery gene
  DELCS14_RS05610 (DelCs14_1122) pilB 1271749..1273491 (-) 1743 WP_013800820.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DELCS14_RS05620 (DelCs14_1123) - 1273732..1274661 (-) 930 WP_013800821.1 polyprenyl synthetase family protein -
  DELCS14_RS05625 (DelCs14_1124) rplU 1274892..1275203 (+) 312 WP_012207284.1 50S ribosomal protein L21 -
  DELCS14_RS05630 (DelCs14_1125) rpmA 1275219..1275476 (+) 258 WP_012207283.1 50S ribosomal protein L27 -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44434.24 Da        Isoelectric Point: 9.3922

>NTDB_id=40822 DELCS14_RS05605 WP_013800819.1 1270493..1271710(-) (pilC) [Delftia sp. Cs1-4]
MATAASKGIKEFVFEWEGKDRNGKIVRGETRAGGINQVQAMLRRQGVLPSKIKKRRTRGGKRIKPKDIALFTRQMATMMK
AGVPLLQAFDIVGRGNTNPSVTRLLADIRSDVETGTSLNAAYRKHPMYFDSLYCNLVEAGEAAGILEALLDRLATYMEKT
EAIKSKIKSALMYPISVIVVAFIVVTIIMIFVIPAFKEVFSSFGADLPAPTLFVMGISDVFVQWWWLIFGVIGGGLYFFM
QAWKRNERMQQFMDRTLLKVPVFGVLIEKSCVARWTRTLSTMFAAGVPLVEALDSVGGASGNAVYANATEKIQQEVSTGT
SLTVAMTNANVFPSMVLQMCAIGEESGSIDHMLGKAADFYEEEVDDMVAGLSSLMEPIIIVFLGTLIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=40822 DELCS14_RS05605 WP_013800819.1 1270493..1271710(-) (pilC) [Delftia sp. Cs1-4]
ATGGCCACAGCCGCGTCCAAAGGAATCAAGGAATTTGTCTTTGAATGGGAGGGCAAGGATCGCAACGGCAAGATCGTCCG
CGGCGAAACCCGGGCTGGGGGCATCAACCAGGTCCAGGCCATGCTGCGCCGTCAGGGCGTGCTTCCCAGCAAGATCAAGA
AGCGCCGTACGCGCGGCGGCAAAAGAATCAAACCCAAGGACATCGCGCTGTTCACGCGCCAGATGGCCACGATGATGAAG
GCTGGTGTCCCGCTGCTGCAGGCCTTCGACATCGTCGGGCGCGGCAACACCAACCCCAGTGTCACGCGCCTGCTGGCCGA
TATCCGCTCCGACGTGGAGACGGGCACCTCGCTGAATGCGGCCTATCGCAAGCACCCCATGTACTTCGATAGCCTCTACT
GCAATCTGGTGGAGGCCGGGGAAGCGGCCGGTATCCTGGAAGCCCTGCTGGACCGCCTGGCCACGTACATGGAGAAGACC
GAGGCCATCAAGTCCAAGATCAAATCGGCGCTGATGTACCCGATCTCGGTCATCGTGGTGGCCTTCATCGTCGTGACCAT
CATCATGATTTTCGTGATCCCGGCCTTCAAGGAAGTGTTCAGTTCGTTCGGCGCTGACCTGCCGGCGCCGACGCTGTTCG
TGATGGGCATCAGCGATGTCTTTGTCCAATGGTGGTGGTTGATCTTTGGCGTGATTGGCGGCGGCCTCTACTTCTTCATG
CAGGCCTGGAAGCGCAACGAGCGCATGCAGCAATTCATGGACCGTACGCTGCTGAAGGTGCCGGTCTTTGGCGTGCTGAT
CGAGAAATCCTGCGTCGCACGCTGGACGCGCACGCTGTCGACCATGTTTGCGGCAGGCGTTCCGCTGGTCGAGGCACTGG
ATTCCGTGGGCGGCGCCTCCGGGAATGCCGTCTACGCCAATGCCACCGAGAAGATCCAGCAGGAAGTCTCCACCGGCACC
AGCCTCACGGTAGCCATGACCAATGCCAACGTCTTTCCCTCCATGGTGCTGCAGATGTGCGCCATCGGCGAGGAATCCGG
CTCCATCGACCACATGCTTGGCAAGGCGGCCGATTTCTACGAGGAGGAGGTCGATGACATGGTGGCTGGCCTGTCCAGCC
TGATGGAGCCCATCATCATTGTTTTCCTGGGCACCCTCATCGGCGGCATCGTTGTTTCGATGTATCTGCCCATCTTCAAG
CTGGGTCAGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.95

99.753

0.548
  pilG Neisseria gonorrhoeae MS11

50.5

98.765

0.499
  pilG Neisseria meningitidis 44/76-A

50.25

98.765

0.496
  pilC Legionella pneumophila strain ERS1305867

50.253

97.778

0.491
  pilC Acinetobacter baylyi ADP1

48.995

98.272

0.481
  pilC Acinetobacter baumannii D1279779

47.607

98.025

0.467
  pilC Vibrio cholerae strain A1552

40.554

98.025

0.398
  pilC Vibrio campbellii strain DS40M4

39.043

98.025

0.383
  pilC Thermus thermophilus HB27

37.5

98.765

0.37

Multiple sequence alignment