Detailed information NTG0040821

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DELCS14_RS05600
• Genome accession: NC_015563
• Coordinates: 1269609..1270493 (-)
• Length: 294 a.a.
• NCBI ID: WP_013800818.1
• Uniprot ID: -
• Organism: Delftia sp. Cs1-4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1264609..1275493

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DELCS14_RS05570 (DelCs14_1114)	argJ	1264923..1266155 (+)	1233	WP_013800814.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
DELCS14_RS05575 (DelCs14_1115)	-	1266321..1267277 (+)	957	WP_013800815.1	ATP-binding protein	-
DELCS14_RS05580 (DelCs14_1116)	-	1267328..1267846 (+)	519	WP_012207292.1	NUDIX domain-containing protein	-
DELCS14_RS05585 (DelCs14_1117)	-	1267857..1268087 (-)	231	WP_085929076.1	DNA gyrase inhibitor YacG	-
DELCS14_RS05590 (DelCs14_1118)	zapD	1268105..1268860 (-)	756	WP_012207290.1	cell division protein ZapD	-
DELCS14_RS05595 (DelCs14_1119)	coaE	1268950..1269594 (-)	645	WP_013800817.1	dephospho-CoA kinase	-
DELCS14_RS05600 (DelCs14_1120)	pilD	1269609..1270493 (-)	885	WP_013800818.1	A24 family peptidase	Machinery gene
DELCS14_RS05605 (DelCs14_1121)	pilC	1270493..1271710 (-)	1218	WP_013800819.1	type II secretion system F family protein	Machinery gene
DELCS14_RS05610 (DelCs14_1122)	pilB	1271749..1273491 (-)	1743	WP_013800820.1	type IV-A pilus assembly ATPase PilB	Machinery gene
DELCS14_RS05620 (DelCs14_1123)	-	1273732..1274661 (-)	930	WP_013800821.1	polyprenyl synthetase family protein	-
DELCS14_RS05625 (DelCs14_1124)	rplU	1274892..1275203 (+)	312	WP_012207284.1	50S ribosomal protein L21	-
DELCS14_RS05630 (DelCs14_1125)	rpmA	1275219..1275476 (+)	258	WP_012207283.1	50S ribosomal protein L27	-

Sequence

Protein

• Length: 294 a.a.
• Molecular weight: 31669.30 Da
• Isoelectric Point: 6.9135

>NTDB_id=40821 DELCS14_RS05600 WP_013800818.1 1269609..1270493(-) (pilD) [Delftia sp. Cs1-4]
MVLELWMQAALGGLLGLLVGSFLNVVVHRLPRMMEQQWNAECAQWAQEQSGATPPSAAPAPAEPPLSLSRPRSRCPHCGH
AIHWYENIPVLSYLALRGRCSECKASISIRYPLVELACAALFAYCTMQWGITPTGAIWCLFSAALLSLALIDWDTTLLPD
DITLPLLWAGLLSSALHWTAVPLADAVWGAAAGYLSLWLVYWAFKLATGKEGMGYGDFKLFAALGAWFGWQALVPIILIS
SVIGAIVGIALKINSRLREGGYVPFGPFLAGAGFAAMVFGPQQMLQSLLAAIGL

Nucleotide

• Length: 885 bp

>NTDB_id=40821 DELCS14_RS05600 WP_013800818.1 1269609..1270493(-) (pilD) [Delftia sp. Cs1-4]
ATGGTTTTGGAACTCTGGATGCAGGCTGCATTGGGCGGCCTGCTGGGCCTGTTGGTTGGCAGCTTTCTCAACGTGGTGGT
GCACAGGCTGCCCCGCATGATGGAGCAGCAATGGAATGCGGAATGCGCCCAATGGGCGCAGGAGCAATCCGGCGCCACGC
CTCCCTCTGCTGCGCCTGCCCCTGCCGAGCCCCCCCTGAGCCTGAGCCGCCCCCGCTCGCGCTGCCCGCATTGCGGCCAT
GCCATCCACTGGTACGAGAACATTCCCGTGCTCAGCTATCTGGCGCTGCGGGGCCGGTGCTCGGAATGCAAGGCATCGAT
CAGCATCCGCTACCCGCTGGTGGAACTGGCCTGCGCCGCGCTATTCGCCTACTGCACGATGCAATGGGGCATCACGCCCA
CGGGGGCCATCTGGTGCCTGTTCAGCGCCGCCTTGCTGAGCCTGGCGCTGATCGACTGGGATACCACACTGCTCCCCGAC
GACATCACCCTGCCCTTGCTGTGGGCCGGGCTGCTTTCATCGGCACTGCACTGGACCGCCGTGCCTCTGGCCGACGCGGT
CTGGGGTGCCGCAGCGGGCTATCTTTCGCTGTGGCTGGTCTACTGGGCCTTCAAGCTGGCCACCGGCAAGGAAGGCATGG
GCTACGGCGACTTCAAGCTGTTTGCCGCGCTTGGGGCTTGGTTCGGCTGGCAGGCTCTTGTGCCCATCATCCTGATCTCG
TCCGTGATTGGCGCCATCGTGGGCATTGCGCTGAAGATCAACAGCCGCCTGCGCGAAGGTGGCTATGTTCCCTTCGGCCC
CTTTCTTGCGGGCGCCGGCTTTGCCGCCATGGTGTTCGGCCCCCAGCAGATGCTGCAATCCCTGTTGGCGGCCATCGGTC
TTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-128)

• Type IV leader peptidase family (Peptidase_A24) (140-249)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.786	95.238	0.493
pilD	Vibrio campbellii strain DS40M4	47.122	94.558	0.446
pilD	Neisseria gonorrhoeae MS11	46.617	90.476	0.422
pilD	Acinetobacter nosocomialis M2	45.221	92.517	0.418
pilD	Acinetobacter baumannii D1279779	44.853	92.517	0.415