Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | GPY15_RS10760 | Genome accession | NZ_CP046810 |
| Coordinates | 2366839..2368062 (+) | Length | 407 a.a. |
| NCBI ID | WP_158161906.1 | Uniprot ID | - |
| Organism | Grimontia hollisae strain 1078-81 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2361839..2373062
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY15_RS10740 | ampD | 2362832..2363374 (-) | 543 | WP_158161898.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| GPY15_RS10745 | nadC | 2363566..2364471 (+) | 906 | WP_158161900.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| GPY15_RS10750 | pilA | 2364699..2365133 (+) | 435 | WP_158161902.1 | pilin | Machinery gene |
| GPY15_RS10755 | pilB | 2365133..2366827 (+) | 1695 | WP_158161904.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GPY15_RS10760 | pilC | 2366839..2368062 (+) | 1224 | WP_158161906.1 | type II secretion system F family protein | Machinery gene |
| GPY15_RS10765 | pilD | 2368170..2369039 (+) | 870 | WP_158161908.1 | prepilin peptidase | Machinery gene |
| GPY15_RS10770 | coaE | 2369043..2369666 (+) | 624 | WP_005502108.1 | dephospho-CoA kinase | - |
| GPY15_RS10775 | zapD | 2369656..2370396 (+) | 741 | WP_005502110.1 | cell division protein ZapD | - |
| GPY15_RS10780 | yacG | 2370431..2370628 (+) | 198 | WP_115660105.1 | DNA gyrase inhibitor YacG | - |
| GPY15_RS10785 | mutT | 2370713..2371117 (-) | 405 | WP_114996183.1 | 8-oxo-dGTP diphosphatase MutT | - |
Sequence
Protein
Download Length: 407 a.a. Molecular weight: 44971.87 Da Isoelectric Point: 10.0910
>NTDB_id=408189 GPY15_RS10760 WP_158161906.1 2366839..2368062(+) (pilC) [Grimontia hollisae strain 1078-81]
MATSSHKLFSYQWRGVTSKGAKVKGQTLAYSEQEARQALQEQRIRLDKIKKRSPSSWVRRKNAANAKDITLFSRQMATML
EAGVPLGETLRLLKASAKKAEMKFILGQIYSHIEAGSSLAQAMKTSSPLFDQFYCDLVATGEQTGHLEQIFARICVYREK
SEETKAKVIKAMIYPSIVCFIAILVTVGMLIFVIPTFKDVFSSFGAELPWFTRKVLGISDAIQLYGIYMLLALFIAVACV
RLGVTKSDKFRLRASRFSLQIPVIGDVLTKATISRFTRTLATTFSAGIPLLSGLSAAGKTANNTHYQRVIEEVHKQTSGG
RPLHRAIKETGQFPDMMIQMVMIGEESGALDDMLNKVAGIYEADVDNTVDNLGKILEPMIIVVLGVLIGSLVVAMYLPMF
NLMSVMG
MATSSHKLFSYQWRGVTSKGAKVKGQTLAYSEQEARQALQEQRIRLDKIKKRSPSSWVRRKNAANAKDITLFSRQMATML
EAGVPLGETLRLLKASAKKAEMKFILGQIYSHIEAGSSLAQAMKTSSPLFDQFYCDLVATGEQTGHLEQIFARICVYREK
SEETKAKVIKAMIYPSIVCFIAILVTVGMLIFVIPTFKDVFSSFGAELPWFTRKVLGISDAIQLYGIYMLLALFIAVACV
RLGVTKSDKFRLRASRFSLQIPVIGDVLTKATISRFTRTLATTFSAGIPLLSGLSAAGKTANNTHYQRVIEEVHKQTSGG
RPLHRAIKETGQFPDMMIQMVMIGEESGALDDMLNKVAGIYEADVDNTVDNLGKILEPMIIVVLGVLIGSLVVAMYLPMF
NLMSVMG
Nucleotide
Download Length: 1224 bp
>NTDB_id=408189 GPY15_RS10760 WP_158161906.1 2366839..2368062(+) (pilC) [Grimontia hollisae strain 1078-81]
ATGGCCACCAGTTCCCATAAACTTTTCTCTTACCAGTGGCGCGGTGTGACGTCGAAAGGCGCCAAAGTCAAAGGCCAGAC
ACTGGCATACTCCGAGCAGGAAGCCAGACAGGCACTGCAGGAGCAGCGGATCCGGCTGGATAAAATCAAAAAGCGCTCGC
CCTCTTCCTGGGTGCGGCGCAAAAATGCCGCCAACGCCAAAGACATTACCCTTTTTTCGCGCCAGATGGCGACCATGCTG
GAAGCGGGCGTGCCGCTGGGAGAAACCCTCAGGCTGCTGAAAGCCAGCGCCAAAAAAGCAGAAATGAAATTTATCCTCGG
CCAGATATACAGCCACATTGAAGCGGGATCGTCACTGGCGCAGGCAATGAAAACCAGTTCCCCTCTTTTTGACCAGTTCT
ACTGCGATCTGGTGGCAACCGGTGAACAGACTGGGCACTTAGAACAGATTTTTGCCCGTATCTGTGTCTACCGGGAAAAA
AGTGAGGAAACCAAAGCCAAAGTCATCAAAGCGATGATTTACCCATCGATTGTCTGTTTTATCGCGATCCTTGTTACCGT
CGGCATGCTGATCTTCGTTATCCCAACGTTTAAGGATGTCTTTTCATCGTTTGGGGCCGAACTGCCCTGGTTCACCCGTA
AAGTGCTGGGCATTTCAGATGCTATCCAGCTTTACGGCATTTATATGCTGCTGGCTCTGTTTATCGCTGTAGCCTGTGTT
CGGCTTGGCGTCACCAAAAGCGATAAATTCCGGCTCAGGGCCAGCCGGTTTTCCCTGCAAATCCCGGTGATCGGAGACGT
GCTGACCAAAGCCACTATTTCCCGTTTTACCCGCACCCTGGCCACCACATTCAGTGCCGGTATTCCCTTACTCAGTGGCT
TATCGGCAGCCGGTAAAACCGCCAACAACACCCACTACCAACGGGTAATCGAAGAGGTCCATAAACAGACATCCGGCGGC
CGTCCGCTCCACCGTGCCATCAAAGAAACCGGACAGTTTCCCGATATGATGATCCAGATGGTGATGATTGGTGAAGAGTC
CGGCGCCTTGGATGACATGCTGAACAAAGTCGCCGGCATCTATGAGGCTGATGTTGATAACACGGTCGACAACCTTGGCA
AAATCCTTGAGCCGATGATCATCGTTGTGCTCGGGGTGTTGATAGGTTCCCTGGTGGTTGCCATGTATCTGCCTATGTTC
AACCTGATGAGTGTTATGGGATAA
ATGGCCACCAGTTCCCATAAACTTTTCTCTTACCAGTGGCGCGGTGTGACGTCGAAAGGCGCCAAAGTCAAAGGCCAGAC
ACTGGCATACTCCGAGCAGGAAGCCAGACAGGCACTGCAGGAGCAGCGGATCCGGCTGGATAAAATCAAAAAGCGCTCGC
CCTCTTCCTGGGTGCGGCGCAAAAATGCCGCCAACGCCAAAGACATTACCCTTTTTTCGCGCCAGATGGCGACCATGCTG
GAAGCGGGCGTGCCGCTGGGAGAAACCCTCAGGCTGCTGAAAGCCAGCGCCAAAAAAGCAGAAATGAAATTTATCCTCGG
CCAGATATACAGCCACATTGAAGCGGGATCGTCACTGGCGCAGGCAATGAAAACCAGTTCCCCTCTTTTTGACCAGTTCT
ACTGCGATCTGGTGGCAACCGGTGAACAGACTGGGCACTTAGAACAGATTTTTGCCCGTATCTGTGTCTACCGGGAAAAA
AGTGAGGAAACCAAAGCCAAAGTCATCAAAGCGATGATTTACCCATCGATTGTCTGTTTTATCGCGATCCTTGTTACCGT
CGGCATGCTGATCTTCGTTATCCCAACGTTTAAGGATGTCTTTTCATCGTTTGGGGCCGAACTGCCCTGGTTCACCCGTA
AAGTGCTGGGCATTTCAGATGCTATCCAGCTTTACGGCATTTATATGCTGCTGGCTCTGTTTATCGCTGTAGCCTGTGTT
CGGCTTGGCGTCACCAAAAGCGATAAATTCCGGCTCAGGGCCAGCCGGTTTTCCCTGCAAATCCCGGTGATCGGAGACGT
GCTGACCAAAGCCACTATTTCCCGTTTTACCCGCACCCTGGCCACCACATTCAGTGCCGGTATTCCCTTACTCAGTGGCT
TATCGGCAGCCGGTAAAACCGCCAACAACACCCACTACCAACGGGTAATCGAAGAGGTCCATAAACAGACATCCGGCGGC
CGTCCGCTCCACCGTGCCATCAAAGAAACCGGACAGTTTCCCGATATGATGATCCAGATGGTGATGATTGGTGAAGAGTC
CGGCGCCTTGGATGACATGCTGAACAAAGTCGCCGGCATCTATGAGGCTGATGTTGATAACACGGTCGACAACCTTGGCA
AAATCCTTGAGCCGATGATCATCGTTGTGCTCGGGGTGTTGATAGGTTCCCTGGTGGTTGCCATGTATCTGCCTATGTTC
AACCTGATGAGTGTTATGGGATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Vibrio cholerae strain A1552 |
52.463 |
99.754 |
0.523 |
| pilC | Vibrio campbellii strain DS40M4 |
51.106 |
100 |
0.511 |
| pilC | Pseudomonas stutzeri DSM 10701 |
42.26 |
100 |
0.423 |
| pilC | Acinetobacter baumannii D1279779 |
40.704 |
97.789 |
0.398 |
| pilC | Acinetobacter baylyi ADP1 |
40 |
99.509 |
0.398 |
| pilC | Legionella pneumophila strain ERS1305867 |
38.614 |
99.263 |
0.383 |
| pilG | Neisseria gonorrhoeae MS11 |
40.625 |
94.349 |
0.383 |
| pilG | Neisseria meningitidis 44/76-A |
40.365 |
94.349 |
0.381 |