Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | GPY15_RS10750 | Genome accession | NZ_CP046810 |
| Coordinates | 2364699..2365133 (+) | Length | 144 a.a. |
| NCBI ID | WP_158161902.1 | Uniprot ID | - |
| Organism | Grimontia hollisae strain 1078-81 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2359699..2370133
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY15_RS10735 | pdhR | 2361740..2362513 (-) | 774 | WP_005502094.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| GPY15_RS10740 | ampD | 2362832..2363374 (-) | 543 | WP_158161898.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| GPY15_RS10745 | nadC | 2363566..2364471 (+) | 906 | WP_158161900.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| GPY15_RS10750 | pilA | 2364699..2365133 (+) | 435 | WP_158161902.1 | pilin | Machinery gene |
| GPY15_RS10755 | pilB | 2365133..2366827 (+) | 1695 | WP_158161904.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GPY15_RS10760 | pilC | 2366839..2368062 (+) | 1224 | WP_158161906.1 | type II secretion system F family protein | Machinery gene |
| GPY15_RS10765 | pilD | 2368170..2369039 (+) | 870 | WP_158161908.1 | prepilin peptidase | Machinery gene |
| GPY15_RS10770 | coaE | 2369043..2369666 (+) | 624 | WP_005502108.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 144 a.a. Molecular weight: 15076.44 Da Isoelectric Point: 5.0804
>NTDB_id=408187 GPY15_RS10750 WP_158161902.1 2364699..2365133(+) (pilA) [Grimontia hollisae strain 1078-81]
MKKQQGFSLIELMIVIAVIGVLTAVAIPQYQNYVQKSELGAALASVTALKINVEDKIATDGAFPTIANSDMSSELGATNT
ILGTMETKQSAGAAGQIILTLSGKTQNSTKKIALERDANGEWICLTDLTATAIFPKGCNTGTIL
MKKQQGFSLIELMIVIAVIGVLTAVAIPQYQNYVQKSELGAALASVTALKINVEDKIATDGAFPTIANSDMSSELGATNT
ILGTMETKQSAGAAGQIILTLSGKTQNSTKKIALERDANGEWICLTDLTATAIFPKGCNTGTIL
Nucleotide
Download Length: 435 bp
>NTDB_id=408187 GPY15_RS10750 WP_158161902.1 2364699..2365133(+) (pilA) [Grimontia hollisae strain 1078-81]
ATGAAAAAGCAACAGGGTTTTAGTTTAATTGAGTTAATGATTGTAATTGCGGTAATTGGCGTCCTAACAGCAGTCGCAAT
TCCCCAGTACCAGAACTATGTTCAAAAGTCTGAGCTAGGCGCAGCCTTGGCTAGCGTTACAGCATTAAAAATTAACGTAG
AAGACAAAATTGCAACGGACGGGGCTTTCCCTACAATTGCAAACAGTGATATGTCCAGTGAATTAGGCGCCACTAACACC
ATCTTAGGCACAATGGAAACTAAGCAATCTGCAGGTGCCGCTGGCCAGATAATATTGACACTTAGTGGTAAAACTCAAAA
CAGCACTAAAAAAATTGCTCTAGAGCGTGATGCAAATGGAGAGTGGATCTGTCTTACAGACCTTACTGCAACAGCAATTT
TTCCCAAAGGCTGCAACACTGGCACAATTTTATAG
ATGAAAAAGCAACAGGGTTTTAGTTTAATTGAGTTAATGATTGTAATTGCGGTAATTGGCGTCCTAACAGCAGTCGCAAT
TCCCCAGTACCAGAACTATGTTCAAAAGTCTGAGCTAGGCGCAGCCTTGGCTAGCGTTACAGCATTAAAAATTAACGTAG
AAGACAAAATTGCAACGGACGGGGCTTTCCCTACAATTGCAAACAGTGATATGTCCAGTGAATTAGGCGCCACTAACACC
ATCTTAGGCACAATGGAAACTAAGCAATCTGCAGGTGCCGCTGGCCAGATAATATTGACACTTAGTGGTAAAACTCAAAA
CAGCACTAAAAAAATTGCTCTAGAGCGTGATGCAAATGGAGAGTGGATCTGTCTTACAGACCTTACTGCAACAGCAATTT
TTCCCAAAGGCTGCAACACTGGCACAATTTTATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae strain A1552 |
49.664 |
100 |
0.514 |
| pilA | Vibrio cholerae C6706 |
49.664 |
100 |
0.514 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
49.664 |
100 |
0.514 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
44.056 |
99.306 |
0.438 |
| pilA | Pseudomonas aeruginosa PAK |
40.667 |
100 |
0.424 |
| pilA | Acinetobacter baumannii strain A118 |
40.411 |
100 |
0.41 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
39.098 |
92.361 |
0.361 |