Detailed information
Bioinformatically predicted
Overview
| Name | pilB | Type | Machinery gene |
| Locus tag | GPY15_RS10755 | Genome accession | NZ_CP046810 |
| Coordinates | 2365133..2366827 (+) | Length | 564 a.a. |
| NCBI ID | WP_158161904.1 | Uniprot ID | - |
| Organism | Grimontia hollisae strain 1078-81 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2360133..2371827
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY15_RS10735 | pdhR | 2361740..2362513 (-) | 774 | WP_005502094.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| GPY15_RS10740 | ampD | 2362832..2363374 (-) | 543 | WP_158161898.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| GPY15_RS10745 | nadC | 2363566..2364471 (+) | 906 | WP_158161900.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| GPY15_RS10750 | pilA | 2364699..2365133 (+) | 435 | WP_158161902.1 | pilin | Machinery gene |
| GPY15_RS10755 | pilB | 2365133..2366827 (+) | 1695 | WP_158161904.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GPY15_RS10760 | pilC | 2366839..2368062 (+) | 1224 | WP_158161906.1 | type II secretion system F family protein | Machinery gene |
| GPY15_RS10765 | pilD | 2368170..2369039 (+) | 870 | WP_158161908.1 | prepilin peptidase | Machinery gene |
| GPY15_RS10770 | coaE | 2369043..2369666 (+) | 624 | WP_005502108.1 | dephospho-CoA kinase | - |
| GPY15_RS10775 | zapD | 2369656..2370396 (+) | 741 | WP_005502110.1 | cell division protein ZapD | - |
| GPY15_RS10780 | yacG | 2370431..2370628 (+) | 198 | WP_115660105.1 | DNA gyrase inhibitor YacG | - |
| GPY15_RS10785 | mutT | 2370713..2371117 (-) | 405 | WP_114996183.1 | 8-oxo-dGTP diphosphatase MutT | - |
Sequence
Protein
Download Length: 564 a.a. Molecular weight: 61982.58 Da Isoelectric Point: 5.8770
>NTDB_id=408188 GPY15_RS10755 WP_158161904.1 2365133..2366827(+) (pilB) [Grimontia hollisae strain 1078-81]
MSHNLAVALRRAGYISPAQEQEVIAKVKAEGVSAPSALLALHILSSEALANAVSELFSEPLHSIKEYPWENTSQFVNQQD
LVLSSQALPLEIKHHQLFLGLSDPTRLDIQDDFQFATGYSIMPVLLEHAQIEGAIRRLYGKNVTERVKTSSVSDSELEAL
STNSDEIADTDDLFSDDAPVSRYIQQVLLDAVRKQASDIHFEPFEQRYQIRFRLDGILQTHSTPPVGISRRLSTRLKIIA
KLNIAERRLPQDGRIKLNLSENKSIDMRVSTLPTLWGEKVVLRILDGGSVALDIDKLGYSQQQKDDYLAALDRPQGMILM
TGPTGSGKTVSLYTGLKYLNTAERNISTAEDPVEINLPGINQVNINNDIGLDFAKALRAFLRQDPDVVMVGEIRDLETAE
IGIKAAQTGHLVLSTLHTNSAAESVTRLSNMGVAPYNLAASLTLIIAQRLGRRLCQHCKVPHPPGDRHLTALTQHYPSLR
PEQVYQASPEGCDHCNNGYLGRVGIYEVMPITRELAEAIGNGASASRIETLAMGNGMLTLPLSGIEKLNEGITSLAELQR
VISL
MSHNLAVALRRAGYISPAQEQEVIAKVKAEGVSAPSALLALHILSSEALANAVSELFSEPLHSIKEYPWENTSQFVNQQD
LVLSSQALPLEIKHHQLFLGLSDPTRLDIQDDFQFATGYSIMPVLLEHAQIEGAIRRLYGKNVTERVKTSSVSDSELEAL
STNSDEIADTDDLFSDDAPVSRYIQQVLLDAVRKQASDIHFEPFEQRYQIRFRLDGILQTHSTPPVGISRRLSTRLKIIA
KLNIAERRLPQDGRIKLNLSENKSIDMRVSTLPTLWGEKVVLRILDGGSVALDIDKLGYSQQQKDDYLAALDRPQGMILM
TGPTGSGKTVSLYTGLKYLNTAERNISTAEDPVEINLPGINQVNINNDIGLDFAKALRAFLRQDPDVVMVGEIRDLETAE
IGIKAAQTGHLVLSTLHTNSAAESVTRLSNMGVAPYNLAASLTLIIAQRLGRRLCQHCKVPHPPGDRHLTALTQHYPSLR
PEQVYQASPEGCDHCNNGYLGRVGIYEVMPITRELAEAIGNGASASRIETLAMGNGMLTLPLSGIEKLNEGITSLAELQR
VISL
Nucleotide
Download Length: 1695 bp
>NTDB_id=408188 GPY15_RS10755 WP_158161904.1 2365133..2366827(+) (pilB) [Grimontia hollisae strain 1078-81]
GTGAGCCACAACCTTGCTGTAGCCTTGCGCCGGGCTGGATATATTTCCCCGGCGCAAGAGCAAGAGGTGATCGCCAAAGT
CAAAGCCGAGGGTGTCAGCGCACCGTCGGCTTTGCTCGCTTTACATATTCTGAGCAGTGAGGCGCTGGCAAACGCAGTAT
CTGAGCTTTTCAGTGAGCCTTTGCACAGTATTAAAGAGTACCCCTGGGAAAACACCAGCCAGTTTGTCAACCAACAGGAT
CTGGTGCTCTCCAGCCAGGCCCTGCCGCTGGAGATTAAACACCACCAGCTGTTTCTGGGCCTCAGTGACCCTACTCGACT
GGATATTCAGGATGATTTCCAGTTTGCCACCGGTTATTCGATTATGCCGGTGCTGCTGGAACATGCCCAAATAGAAGGAG
CAATTCGCCGCCTGTACGGCAAAAATGTCACAGAGCGGGTCAAAACCAGCAGCGTCTCGGATTCCGAACTGGAAGCGCTC
AGCACCAACAGCGATGAGATAGCAGACACCGACGACCTGTTTTCCGATGATGCCCCGGTCAGCCGTTATATCCAGCAGGT
TCTTTTGGATGCGGTGCGCAAACAAGCCTCCGATATTCACTTTGAACCCTTTGAACAGCGCTACCAGATACGTTTCCGTC
TCGATGGCATTTTGCAAACCCACAGCACACCGCCGGTGGGGATCTCCCGCCGCCTTTCTACACGCCTGAAAATCATCGCC
AAGCTCAATATTGCCGAGCGCCGGCTGCCGCAGGATGGGAGAATCAAGCTCAACCTGTCGGAAAACAAATCCATCGATAT
GCGGGTCTCGACCCTGCCTACTCTGTGGGGAGAAAAAGTGGTGCTGCGAATCCTTGATGGCGGCAGTGTGGCACTGGATA
TCGACAAGCTGGGTTATAGCCAACAGCAAAAAGACGACTACCTTGCCGCCCTCGATCGCCCACAGGGGATGATCTTGATG
ACCGGGCCAACAGGCAGCGGGAAAACCGTCTCCTTGTATACCGGGCTGAAATATTTAAATACTGCCGAGCGCAATATCTC
TACCGCAGAAGACCCGGTAGAAATCAACCTGCCCGGTATCAACCAGGTCAATATCAACAACGATATCGGGCTTGATTTTG
CCAAGGCATTGCGGGCCTTCTTACGTCAGGACCCGGATGTGGTAATGGTGGGTGAGATCCGGGATTTAGAAACCGCAGAA
ATCGGCATTAAAGCAGCGCAAACCGGCCATTTGGTGCTTTCCACCCTTCACACCAACTCTGCCGCAGAGAGTGTCACACG
TCTGTCGAACATGGGGGTTGCCCCTTACAACCTGGCTGCTTCCCTGACCCTGATTATTGCCCAGCGTCTGGGACGCCGTC
TGTGCCAGCACTGCAAAGTCCCGCATCCCCCCGGCGATCGCCACCTGACGGCACTCACCCAACATTATCCTTCGTTGAGG
CCGGAGCAGGTTTACCAGGCATCGCCTGAAGGCTGTGACCATTGCAACAACGGCTATCTGGGACGGGTGGGAATTTATGA
GGTGATGCCCATCACCCGCGAGCTTGCCGAGGCCATTGGCAATGGTGCATCAGCATCACGGATTGAGACCCTCGCCATGG
GCAACGGCATGTTAACACTGCCACTTTCCGGCATTGAAAAACTAAATGAAGGCATCACCAGCCTTGCTGAACTGCAACGT
GTGATCAGCCTGTAG
GTGAGCCACAACCTTGCTGTAGCCTTGCGCCGGGCTGGATATATTTCCCCGGCGCAAGAGCAAGAGGTGATCGCCAAAGT
CAAAGCCGAGGGTGTCAGCGCACCGTCGGCTTTGCTCGCTTTACATATTCTGAGCAGTGAGGCGCTGGCAAACGCAGTAT
CTGAGCTTTTCAGTGAGCCTTTGCACAGTATTAAAGAGTACCCCTGGGAAAACACCAGCCAGTTTGTCAACCAACAGGAT
CTGGTGCTCTCCAGCCAGGCCCTGCCGCTGGAGATTAAACACCACCAGCTGTTTCTGGGCCTCAGTGACCCTACTCGACT
GGATATTCAGGATGATTTCCAGTTTGCCACCGGTTATTCGATTATGCCGGTGCTGCTGGAACATGCCCAAATAGAAGGAG
CAATTCGCCGCCTGTACGGCAAAAATGTCACAGAGCGGGTCAAAACCAGCAGCGTCTCGGATTCCGAACTGGAAGCGCTC
AGCACCAACAGCGATGAGATAGCAGACACCGACGACCTGTTTTCCGATGATGCCCCGGTCAGCCGTTATATCCAGCAGGT
TCTTTTGGATGCGGTGCGCAAACAAGCCTCCGATATTCACTTTGAACCCTTTGAACAGCGCTACCAGATACGTTTCCGTC
TCGATGGCATTTTGCAAACCCACAGCACACCGCCGGTGGGGATCTCCCGCCGCCTTTCTACACGCCTGAAAATCATCGCC
AAGCTCAATATTGCCGAGCGCCGGCTGCCGCAGGATGGGAGAATCAAGCTCAACCTGTCGGAAAACAAATCCATCGATAT
GCGGGTCTCGACCCTGCCTACTCTGTGGGGAGAAAAAGTGGTGCTGCGAATCCTTGATGGCGGCAGTGTGGCACTGGATA
TCGACAAGCTGGGTTATAGCCAACAGCAAAAAGACGACTACCTTGCCGCCCTCGATCGCCCACAGGGGATGATCTTGATG
ACCGGGCCAACAGGCAGCGGGAAAACCGTCTCCTTGTATACCGGGCTGAAATATTTAAATACTGCCGAGCGCAATATCTC
TACCGCAGAAGACCCGGTAGAAATCAACCTGCCCGGTATCAACCAGGTCAATATCAACAACGATATCGGGCTTGATTTTG
CCAAGGCATTGCGGGCCTTCTTACGTCAGGACCCGGATGTGGTAATGGTGGGTGAGATCCGGGATTTAGAAACCGCAGAA
ATCGGCATTAAAGCAGCGCAAACCGGCCATTTGGTGCTTTCCACCCTTCACACCAACTCTGCCGCAGAGAGTGTCACACG
TCTGTCGAACATGGGGGTTGCCCCTTACAACCTGGCTGCTTCCCTGACCCTGATTATTGCCCAGCGTCTGGGACGCCGTC
TGTGCCAGCACTGCAAAGTCCCGCATCCCCCCGGCGATCGCCACCTGACGGCACTCACCCAACATTATCCTTCGTTGAGG
CCGGAGCAGGTTTACCAGGCATCGCCTGAAGGCTGTGACCATTGCAACAACGGCTATCTGGGACGGGTGGGAATTTATGA
GGTGATGCCCATCACCCGCGAGCTTGCCGAGGCCATTGGCAATGGTGCATCAGCATCACGGATTGAGACCCTCGCCATGG
GCAACGGCATGTTAACACTGCCACTTTCCGGCATTGAAAAACTAAATGAAGGCATCACCAGCCTTGCTGAACTGCAACGT
GTGATCAGCCTGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilB | Vibrio cholerae strain A1552 |
58.584 |
100 |
0.587 |
| pilB | Vibrio campbellii strain DS40M4 |
57.27 |
100 |
0.573 |
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
56.738 |
100 |
0.567 |
| pilB | Acinetobacter baylyi ADP1 |
47.321 |
99.291 |
0.47 |
| pilB | Acinetobacter baumannii D1279779 |
48.393 |
93.794 |
0.454 |
| pilB | Legionella pneumophila strain ERS1305867 |
47.3 |
95.213 |
0.45 |
| pilF | Neisseria gonorrhoeae MS11 |
43.358 |
96.099 |
0.417 |
| pilB/pilB1 | Synechocystis sp. PCC 6803 |
35.548 |
100 |
0.379 |
| pilF | Thermus thermophilus HB27 |
38.336 |
98.05 |
0.376 |