Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | GPY47_RS23345 | Genome accession | NZ_CP046806 |
| Coordinates | 3200543..3200827 (+) | Length | 94 a.a. |
| NCBI ID | WP_031777211.1 | Uniprot ID | A0AAW6ZWA9 |
| Organism | Vibrio alginolyticus strain 2439-01 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3195543..3205827
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY47_RS23335 | - | 3197954..3198226 (+) | 273 | WP_005382341.1 | HU family DNA-binding protein | - |
| GPY47_RS23340 | ppiD | 3198428..3200287 (+) | 1860 | WP_158157355.1 | peptidylprolyl isomerase | - |
| GPY47_RS23345 | comEA | 3200543..3200827 (+) | 285 | WP_031777211.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| GPY47_RS23350 | rrtA | 3200926..3201477 (-) | 552 | WP_005382331.1 | rhombosortase | - |
| GPY47_RS23355 | - | 3201481..3202095 (+) | 615 | WP_158157357.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| GPY47_RS23360 | - | 3202102..3203424 (-) | 1323 | WP_017634779.1 | anti-phage deoxyguanosine triphosphatase | - |
| GPY47_RS23365 | yfbR | 3203440..3204024 (-) | 585 | WP_017634778.1 | 5'-deoxynucleotidase | - |
| GPY47_RS23370 | - | 3204115..3205329 (-) | 1215 | WP_005384283.1 | pyridoxal phosphate-dependent aminotransferase | - |
Sequence
Protein
Download Length: 94 a.a. Molecular weight: 10336.96 Da Isoelectric Point: 5.1423
>NTDB_id=408123 GPY47_RS23345 WP_031777211.1 3200543..3200827(+) (comEA) [Vibrio alginolyticus strain 2439-01]
MKWILTLCLFVFAPFSMAADSATDKYEGIEITVNINTATAEEIATMLKGIGEKKAQSIVDYREEHGPFKTAADLKSVKGI
GEATVKKNEDRILL
MKWILTLCLFVFAPFSMAADSATDKYEGIEITVNINTATAEEIATMLKGIGEKKAQSIVDYREEHGPFKTAADLKSVKGI
GEATVKKNEDRILL
Nucleotide
Download Length: 285 bp
>NTDB_id=408123 GPY47_RS23345 WP_031777211.1 3200543..3200827(+) (comEA) [Vibrio alginolyticus strain 2439-01]
ATGAAATGGATTTTGACATTGTGCTTATTTGTTTTTGCACCTTTTAGCATGGCTGCGGATTCAGCCACTGACAAATATGA
AGGAATTGAAATTACTGTAAATATCAACACGGCCACTGCTGAAGAAATTGCGACCATGTTGAAAGGTATAGGTGAGAAGA
AAGCGCAGAGTATAGTGGACTACCGCGAGGAACATGGCCCTTTTAAAACGGCAGCAGATTTGAAGAGCGTAAAAGGCATT
GGTGAAGCGACAGTTAAGAAAAACGAAGACCGCATTTTACTGTAG
ATGAAATGGATTTTGACATTGTGCTTATTTGTTTTTGCACCTTTTAGCATGGCTGCGGATTCAGCCACTGACAAATATGA
AGGAATTGAAATTACTGTAAATATCAACACGGCCACTGCTGAAGAAATTGCGACCATGTTGAAAGGTATAGGTGAGAAGA
AAGCGCAGAGTATAGTGGACTACCGCGAGGAACATGGCCCTTTTAAAACGGCAGCAGATTTGAAGAGCGTAAAAGGCATT
GGTGAAGCGACAGTTAAGAAAAACGAAGACCGCATTTTACTGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
88.298 |
100 |
0.883 |
| comEA | Vibrio campbellii strain DS40M4 |
75.789 |
100 |
0.766 |
| comEA | Vibrio cholerae C6706 |
60.87 |
97.872 |
0.596 |
| comEA | Vibrio cholerae strain A1552 |
60.87 |
97.872 |
0.596 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
50.617 |
86.17 |
0.436 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
59.677 |
65.957 |
0.394 |
| comEA | Legionella pneumophila str. Paris |
36.842 |
100 |
0.372 |
| comEA | Legionella pneumophila strain ERS1305867 |
36.842 |
100 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
37.778 |
95.745 |
0.362 |
| comE | Neisseria gonorrhoeae MS11 |
37.778 |
95.745 |
0.362 |
| comE | Neisseria gonorrhoeae MS11 |
37.778 |
95.745 |
0.362 |
| comE | Neisseria gonorrhoeae MS11 |
37.778 |
95.745 |
0.362 |
| comEA/celA/cilE | Streptococcus pneumoniae TIGR4 |
38.202 |
94.681 |
0.362 |