Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GPX92_RS11120 Genome accession   NZ_CP046802
Coordinates   1447424..1448650 (-) Length   408 a.a.
NCBI ID   WP_158117119.1    Uniprot ID   -
Organism   Vibrio cincinnatiensis strain 2070-81     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1442424..1453650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX92_RS11095 parC 1442541..1444814 (+) 2274 WP_158117116.1 DNA topoisomerase IV subunit A -
  GPX92_RS11100 yacG 1444876..1445073 (-) 198 WP_158117117.1 DNA gyrase inhibitor YacG -
  GPX92_RS11105 zapD 1445131..1445871 (-) 741 WP_078926028.1 cell division protein ZapD -
  GPX92_RS11110 coaE 1445897..1446511 (-) 615 WP_158117118.1 dephospho-CoA kinase -
  GPX92_RS11115 pilD 1446517..1447383 (-) 867 WP_078926030.1 prepilin peptidase Machinery gene
  GPX92_RS11120 pilC 1447424..1448650 (-) 1227 WP_158117119.1 type II secretion system F family protein Machinery gene
  GPX92_RS11125 pilB 1448671..1450359 (-) 1689 WP_078926032.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GPX92_RS11130 pilA 1450366..1450791 (-) 426 WP_158117120.1 pilin Machinery gene
  GPX92_RS11135 nadC 1450988..1451878 (-) 891 WP_154115270.1 carboxylating nicotinate-nucleotide diphosphorylase -
  GPX92_RS11140 ampD 1452076..1452621 (+) 546 WP_078926149.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  GPX92_RS11145 fldB 1452628..1453146 (-) 519 WP_078926035.1 flavodoxin FldB -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44867.11 Da        Isoelectric Point: 10.3780

>NTDB_id=408064 GPX92_RS11120 WP_158117119.1 1447424..1448650(-) (pilC) [Vibrio cincinnatiensis strain 2070-81]
MHSSKVYELKNYRWKGINSSGKKVAGQLLALSELEVRDKLKEQHIQIKKIKKGGVSLLTRLTHRVKAKDITLLTRQLSTM
LTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPISKAMRTASSHFDPLYVDLIQTGEQSGNLAEVFERLATYRE
KSEQLRAKVVKALIYPSMVILVALGVSYLMLTMVIPEFESMFQGFGAELPWFTQQILKLSHAAQAYSLGAILLITSLFLA
LKTARKKSFQVRLKTSRLGLKSPIIGGVLAKAAIAKFSRTLATSFAAGIPILASLKTTAKTAGNVHFETAIDQVHRDTAS
GMPMYIAMRNTEAFPEMVLQMVMIGEESGKLDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFLGVVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=408064 GPX92_RS11120 WP_158117119.1 1447424..1448650(-) (pilC) [Vibrio cincinnatiensis strain 2070-81]
ATGCATTCATCTAAAGTTTATGAACTGAAAAATTACCGTTGGAAAGGCATCAATAGTTCTGGGAAAAAAGTGGCTGGGCA
GTTACTCGCACTCAGTGAACTGGAAGTACGCGATAAACTCAAAGAGCAGCATATTCAGATCAAGAAAATAAAAAAAGGGG
GTGTTTCACTCCTCACCCGCTTAACTCACCGAGTCAAAGCGAAAGATATCACCCTACTTACCCGCCAATTATCGACCATG
TTAACCACGGGGGTTCCCATTGTTCAAGCACTCAAATTGGTCGGAGATAATCACCGTAAAGCAGAAATGAAATCGATTTT
GGCTCAAATTACTAAAAGTGTCGAAGCCGGCACTCCGATATCAAAAGCAATGCGTACCGCCAGTAGTCACTTTGATCCCC
TTTATGTCGACTTGATTCAAACAGGGGAGCAATCTGGAAATTTAGCCGAGGTCTTTGAACGCCTTGCTACCTACCGAGAA
AAAAGTGAACAGTTGCGCGCTAAAGTCGTCAAAGCGCTTATCTATCCGAGTATGGTTATTTTAGTTGCGTTGGGCGTTTC
CTACTTGATGCTAACCATGGTGATTCCTGAATTTGAAAGTATGTTCCAAGGTTTTGGCGCAGAGCTACCTTGGTTTACCC
AACAAATTCTTAAACTCTCCCATGCTGCGCAAGCTTATAGTTTAGGGGCTATATTGCTGATCACCAGCTTGTTTCTGGCC
CTCAAAACTGCTCGTAAAAAATCCTTTCAAGTCCGCCTTAAAACCAGCCGCTTAGGCTTAAAATCTCCGATTATTGGCGG
TGTCTTAGCAAAAGCTGCCATTGCCAAGTTTAGCCGTACCCTTGCGACCAGCTTTGCGGCGGGTATCCCTATTCTTGCCA
GTTTAAAAACCACCGCCAAAACTGCGGGTAATGTGCATTTTGAAACCGCGATTGATCAAGTACACCGAGATACCGCATCG
GGAATGCCAATGTACATTGCCATGCGCAATACAGAAGCCTTTCCCGAAATGGTGCTACAAATGGTCATGATTGGAGAAGA
GTCGGGAAAACTGGATGATATGTTGAATAAAATTGCGACCATTTACGAATTTGAAGTGGATAATACCGTGGATAATTTAG
GAAAAATCCTAGAGCCGTTGATTATCGTCTTCCTAGGAGTGGTGGTAGGAGGATTAGTGGTGGCGATGTATCTTCCCATC
TTTAACTTAATGAGTGTATTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

86.029

100

0.86
  pilC Vibrio campbellii strain DS40M4

72.818

98.284

0.716
  pilC Acinetobacter baumannii D1279779

41.667

100

0.417
  pilC Pseudomonas stutzeri DSM 10701

41.895

98.284

0.412
  pilC Acinetobacter baylyi ADP1

40.931

100

0.409
  pilC Legionella pneumophila strain ERS1305867

41.191

98.775

0.407
  pilG Neisseria meningitidis 44/76-A

40.295

99.755

0.402
  pilG Neisseria gonorrhoeae MS11

39.303

98.529

0.387

Multiple sequence alignment