Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   GPX92_RS11115 Genome accession   NZ_CP046802
Coordinates   1446517..1447383 (-) Length   288 a.a.
NCBI ID   WP_078926030.1    Uniprot ID   -
Organism   Vibrio cincinnatiensis strain 2070-81     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1441517..1452383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX92_RS11095 parC 1442541..1444814 (+) 2274 WP_158117116.1 DNA topoisomerase IV subunit A -
  GPX92_RS11100 yacG 1444876..1445073 (-) 198 WP_158117117.1 DNA gyrase inhibitor YacG -
  GPX92_RS11105 zapD 1445131..1445871 (-) 741 WP_078926028.1 cell division protein ZapD -
  GPX92_RS11110 coaE 1445897..1446511 (-) 615 WP_158117118.1 dephospho-CoA kinase -
  GPX92_RS11115 pilD 1446517..1447383 (-) 867 WP_078926030.1 prepilin peptidase Machinery gene
  GPX92_RS11120 pilC 1447424..1448650 (-) 1227 WP_158117119.1 type II secretion system F family protein Machinery gene
  GPX92_RS11125 pilB 1448671..1450359 (-) 1689 WP_078926032.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GPX92_RS11130 pilA 1450366..1450791 (-) 426 WP_158117120.1 pilin Machinery gene
  GPX92_RS11135 nadC 1450988..1451878 (-) 891 WP_154115270.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32408.63 Da        Isoelectric Point: 8.1365

>NTDB_id=408063 GPX92_RS11115 WP_078926030.1 1446517..1447383(-) (pilD) [Vibrio cincinnatiensis strain 2070-81]
MDIFYYYPWLFPALATLFGLMIGSFLNVVIYRLPKIMEREWRKECADSFPEYGISPPKGKLTLSTPRSTCPHCQTPLRIR
DNVPLLSWLWLKGQCAHCQAPISARYPLVELLTALSSWVVASHFGLSDYSLALLFFTYVLIAATFIDFDCMLLPDQLTLP
LMWVGISLALLGISPLSLTDSVIGAITGYLCLWSIYWLFKGLTGKEGMGYGDFKLLAALGAWFGWQLLPLIILLSSFVGL
IFGIVQLRLQKRGIDKAFPFGPYLAMAGWLAMLWGDKLITWYLHSLVG

Nucleotide


Download         Length: 867 bp        

>NTDB_id=408063 GPX92_RS11115 WP_078926030.1 1446517..1447383(-) (pilD) [Vibrio cincinnatiensis strain 2070-81]
ATGGATATTTTCTATTATTACCCTTGGTTATTTCCGGCCTTAGCGACCCTGTTTGGTTTAATGATTGGCAGTTTTCTCAA
TGTGGTCATCTATCGTTTACCTAAAATCATGGAGCGAGAATGGCGTAAAGAGTGTGCCGACTCTTTTCCTGAATATGGTA
TCTCCCCCCCCAAAGGAAAGTTAACGCTAAGTACACCTCGCTCGACCTGTCCTCACTGCCAAACTCCGCTCAGGATCCGA
GATAATGTCCCGCTACTCAGTTGGCTATGGCTAAAAGGGCAATGCGCACACTGCCAAGCTCCAATCAGCGCTCGCTACCC
TTTAGTAGAACTGCTCACCGCACTTAGCAGTTGGGTGGTCGCTTCTCACTTTGGCCTTAGCGACTATAGCCTCGCCTTAC
TGTTTTTTACCTATGTATTAATCGCCGCGACCTTTATTGATTTTGATTGCATGTTATTACCCGATCAATTGACATTACCT
TTAATGTGGGTGGGAATCAGCTTGGCATTACTTGGTATCAGCCCCCTATCACTGACAGATTCGGTGATCGGTGCCATCAC
GGGTTATCTCTGTCTTTGGTCTATCTACTGGCTATTTAAAGGCTTAACCGGCAAAGAAGGCATGGGGTATGGGGATTTTA
AACTCTTGGCGGCGCTAGGTGCATGGTTCGGCTGGCAATTGCTCCCGCTGATTATCCTGCTCTCCTCTTTTGTTGGCCTT
ATCTTTGGTATCGTTCAATTACGCCTACAAAAACGAGGCATAGATAAAGCCTTTCCTTTTGGGCCTTACCTCGCCATGGC
GGGATGGTTAGCCATGCTATGGGGTGATAAGCTCATTACTTGGTATTTACACTCATTAGTAGGATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)

Type IV leader peptidase family (Peptidase_A24)

(135-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

77.431

100

0.774
  pilD Vibrio campbellii strain DS40M4

71.875

100

0.719
  pilD Acinetobacter nosocomialis M2

53.497

99.306

0.531
  pilD Acinetobacter baumannii D1279779

53.147

99.306

0.528
  pilD Neisseria gonorrhoeae MS11

43.509

98.958

0.431

Multiple sequence alignment