Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   GPY18_RS14745 Genome accession   NZ_CP046800
Coordinates   1667533..1668648 (-) Length   371 a.a.
NCBI ID   WP_158146994.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 2012V-1235     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1662533..1673648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY18_RS14715 hemF 1663091..1664005 (-) 915 WP_158146991.1 oxygen-dependent coproporphyrinogen oxidase -
  GPY18_RS14720 - 1664025..1664582 (-) 558 WP_154183775.1 L-threonylcarbamoyladenylate synthase -
  GPY18_RS14725 purE 1664780..1665265 (+) 486 WP_020332562.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  GPY18_RS14730 - 1665269..1666402 (+) 1134 WP_158146992.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  GPY18_RS14735 - 1666436..1667023 (-) 588 WP_158146993.1 type I DNA topoisomerase -
  GPY18_RS14740 - 1667054..1667530 (-) 477 WP_020332565.1 DUF494 family protein -
  GPY18_RS14745 dprA 1667533..1668648 (-) 1116 WP_158146994.1 DNA-processing protein DprA Machinery gene
  GPY18_RS14750 - 1668648..1669766 (-) 1119 WP_158146995.1 LysM peptidoglycan-binding domain-containing protein -
  GPY18_RS14755 def 1669906..1670418 (+) 513 WP_020332568.1 peptide deformylase -
  GPY18_RS14760 fmt 1670437..1671384 (+) 948 WP_158146996.1 methionyl-tRNA formyltransferase -
  GPY18_RS14765 rsmB 1671435..1672715 (+) 1281 WP_158146997.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40528.96 Da        Isoelectric Point: 6.2302

>NTDB_id=408011 GPY18_RS14745 WP_158146994.1 1667533..1668648(-) (dprA) [Vibrio fluvialis strain 2012V-1235]
MLERDQAAWLAFSFTPQLGIRTLQRLASRYALSDLKQHLNRDGLAVGLKDNQIQYLQRQADQDVDACLRWSEQADNRHIL
TPFHAHYPSLLTEIAAAPPVLFVEGRLEALRAPQIAIVGSRNASIDSQQIAHQFAAQLVEHGLVVTSGLALGIDGYAHDG
ALKAGGETIAVLGSGLECIYPARHRALAGRIVDRGALVSEFRPDAKPRPDHFPRRNRIISGLSLGVLVVEAAEKSGSLIT
ARYAAEQSREVFVVPGSIRNPNSLGSNQLIRQGACLVQHVDHILEEVSSLMDWSRNQSQPEQTELFSGTYNEEELPFPEL
LANVGGEATPVDILANRTNIPVQDVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=408011 GPY18_RS14745 WP_158146994.1 1667533..1668648(-) (dprA) [Vibrio fluvialis strain 2012V-1235]
ATGCTCGAACGCGATCAGGCTGCTTGGCTGGCTTTCAGTTTTACTCCTCAACTCGGTATCCGAACATTGCAGCGTTTAGC
CAGTCGTTACGCGCTGTCTGACCTCAAACAACACCTGAATCGTGACGGCTTGGCCGTAGGACTGAAAGACAACCAGATTC
AGTATTTGCAGCGGCAGGCCGATCAAGACGTCGATGCCTGCCTGCGTTGGAGTGAGCAGGCTGATAATCGCCATATTCTG
ACGCCGTTTCATGCGCACTATCCCTCGTTATTGACCGAAATCGCCGCCGCTCCGCCAGTGCTGTTTGTGGAGGGGCGGCT
TGAAGCGCTGCGTGCGCCGCAAATTGCTATCGTCGGCAGTCGCAACGCCAGTATCGACAGTCAGCAAATCGCTCATCAGT
TTGCCGCGCAATTGGTCGAGCACGGCTTGGTGGTCACCAGTGGTCTGGCGCTTGGTATTGATGGCTACGCGCATGATGGC
GCACTCAAAGCGGGTGGGGAAACTATTGCGGTGCTGGGCTCGGGGTTGGAATGTATTTATCCGGCTCGCCATCGCGCGTT
GGCGGGGCGTATTGTTGACAGAGGCGCCTTAGTGTCGGAATTTCGCCCTGATGCCAAGCCTCGACCTGATCATTTTCCGC
GTCGTAATCGTATTATCAGTGGGTTGTCATTGGGCGTTCTGGTGGTGGAAGCGGCGGAAAAAAGTGGCTCGCTCATCACC
GCGCGTTATGCAGCCGAACAGAGCCGAGAGGTGTTTGTCGTGCCGGGCTCAATTCGCAACCCGAATAGCCTCGGCAGTAA
CCAGTTGATTCGACAAGGGGCGTGTTTGGTACAACACGTCGATCATATTCTCGAAGAAGTCAGCAGTTTGATGGACTGGA
GCCGAAATCAGTCACAACCTGAGCAGACAGAACTTTTTTCTGGCACATATAACGAAGAAGAATTGCCATTTCCCGAGCTG
TTAGCTAACGTAGGGGGAGAGGCTACACCAGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAGGATGTCATGAT
GCAGCTCCTGGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGTAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(319-364)

DNA recombination-mediator protein A (DNA_processg_A)

(75-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

64.151

100

0.642
  dprA Vibrio campbellii strain DS40M4

64.578

98.922

0.639
  dprA Glaesserella parasuis strain SC1401

47.581

100

0.477
  dprA Legionella pneumophila strain ERS1305867

43.733

96.765

0.423
  dprA Neisseria meningitidis strain C311

37.688

100

0.404
  dprA Neisseria meningitidis MC58

37.688

100

0.404
  dprA Haemophilus influenzae Rd KW20

43.713

90.027

0.394
  dprA Neisseria gonorrhoeae MS11

36.181

100

0.388
  dprA Acinetobacter baumannii D1279779

42.216

90.027

0.38
  dprA Neisseria gonorrhoeae strain FA1090

35.696

100

0.38
  dprA Acinetobacter baylyi ADP1

41.916

90.027

0.377

Multiple sequence alignment