Detailed information NTG0407953

Bioinformatically predicted

Overview

• Name: pilQ
• Type: Machinery gene
• Locus tag: GPY43_RS10505
• Genome accession: NZ_CP046797
• Coordinates: 2267463..2269187 (-)
• Length: 574 a.a.
• NCBI ID: WP_041942471.1
• Uniprot ID: -
• Organism: Vibrio furnissii strain 2013V-1001
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2262463..2274187

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY43_RS10485	-	2263165..2263995 (-)	831	WP_055465832.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	-
GPY43_RS10490	-	2264090..2265598 (-)	1509	WP_158107811.1	AAA family ATPase	-
GPY43_RS10495	aroB	2265644..2266729 (-)	1086	WP_004728570.1	3-dehydroquinate synthase	-
GPY43_RS10500	aroK	2266757..2267275 (-)	519	WP_004728569.1	shikimate kinase AroK	-
GPY43_RS10505	pilQ	2267463..2269187 (-)	1725	WP_041942471.1	type IV pilus secretin PilQ family protein	Machinery gene
GPY43_RS10510	pilP	2269212..2269724 (-)	513	WP_154180461.1	pilus assembly protein PilP	Machinery gene
GPY43_RS10515	pilO	2269714..2270304 (-)	591	WP_055465836.1	type 4a pilus biogenesis protein PilO	Machinery gene
GPY43_RS10520	pilN	2270297..2270887 (-)	591	WP_055465837.1	PilN domain-containing protein	Machinery gene
GPY43_RS10525	pilM	2270877..2271881 (-)	1005	WP_158107812.1	type IV pilus assembly protein PilM	Machinery gene

Sequence

Protein

• Length: 574 a.a.
• Molecular weight: 61962.64 Da
• Isoelectric Point: 4.4610

>NTDB_id=407953 GPY43_RS10505 WP_041942471.1 2267463..2269187(-) (pilQ) [Vibrio furnissii strain 2013V-1001]
MIKGLNASTAWGIRCLFVGVCLLLSAATFAQEAAANQLKNIDFRINKDKAAVLIVELASASAVVDVQKTEQGLTIELLKT
DVSDDKLYLVDVRDFATAVENIEVFRQQPSTVLVATVQGAFNYEYSLKGNYLEVVISKVSAQEPQPKSVLEKEGKLISIN
FQDIPVRNVLQLIADYNQFNLVVSDSVSGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPKEELDRREQQQLEK
ARMAEELGDLQSEIIKINFAKASDIAQMIGGDGAVNMLSERGSISIDERTNALLLRELPDNIHVIRDIVASLDIPVKQVQ
IEARIVTVNEGDLDELGVRWGFSSTNGSTTTGGSIESNLGAIGLYDGSSDSGDGAAIDDFLNVNLAATSANASSIAFQVA
KLGADTLLDLELSAMQRESKAEIISSPRLITTNKQPAYIEQGTEIPYLESSSSGATSVAFKKAVLSLKVTPQITPDNRLV
LDLSVTQDRPGEVVKTGTGEAVAINTQRIGTQVLVNNGETVVLGGIFQHSVTSSVDKVPLLGDLPLLGALFRRSYEQMGK
SELLIFVTPKVVIQ

Nucleotide

• Length: 1725 bp

>NTDB_id=407953 GPY43_RS10505 WP_041942471.1 2267463..2269187(-) (pilQ) [Vibrio furnissii strain 2013V-1001]
ATGATTAAAGGACTAAATGCCTCCACGGCTTGGGGAATACGTTGTCTGTTCGTGGGCGTATGCCTGCTGTTATCTGCCGC
CACATTTGCCCAGGAAGCGGCGGCCAATCAGCTGAAAAATATTGACTTTCGCATCAATAAAGACAAAGCGGCGGTGTTGA
TTGTCGAACTTGCGTCGGCTTCTGCGGTGGTGGATGTGCAGAAAACGGAGCAAGGATTGACGATTGAATTGCTTAAAACC
GATGTTAGCGATGACAAACTGTATTTGGTGGACGTGCGCGATTTTGCCACGGCGGTGGAAAACATCGAAGTGTTTCGCCA
GCAACCGAGCACGGTGCTGGTGGCGACGGTGCAAGGGGCATTCAATTACGAATACAGCCTGAAAGGCAATTACTTGGAGG
TGGTGATCAGCAAAGTCAGTGCGCAAGAACCGCAACCGAAAAGTGTCTTAGAAAAAGAGGGCAAGCTGATTTCGATTAAC
TTCCAAGACATTCCCGTGCGCAACGTGCTGCAGCTCATCGCCGATTACAACCAGTTCAACTTGGTGGTCTCTGATTCCGT
CAGCGGTAACTTGACATTGCGCCTCGATGGCGTGCCGTGGCAACAAGTGCTGGATATCATTTTACAAGTCAAAGGGCTGG
ACAAACGGGTCGATGGCAACGTCATTCTGGTGGCACCCAAAGAGGAGCTGGACCGACGCGAGCAGCAGCAATTGGAAAAG
GCGCGCATGGCGGAAGAGCTGGGCGATCTGCAATCGGAAATCATCAAAATCAATTTCGCCAAGGCATCTGACATTGCACA
GATGATTGGCGGCGATGGTGCGGTGAACATGTTGTCGGAGCGTGGCTCCATCAGTATTGATGAGCGCACCAACGCCTTGC
TACTGCGCGAGCTGCCTGACAACATTCACGTGATCCGCGACATCGTGGCCTCTCTCGACATTCCGGTCAAACAAGTGCAA
ATCGAAGCGCGCATCGTCACGGTGAATGAGGGCGATTTGGATGAGCTTGGCGTGCGCTGGGGCTTTAGTTCCACCAACGG
GAGCACCACCACTGGTGGCTCGATTGAAAGTAATCTCGGTGCCATTGGGTTGTATGACGGCAGCAGTGATTCGGGTGATG
GCGCCGCGATTGATGATTTCCTCAATGTGAACCTTGCTGCTACCTCCGCCAATGCATCCAGTATTGCGTTTCAAGTCGCC
AAGCTGGGCGCTGACACCTTACTTGATCTTGAATTGTCGGCGATGCAGCGCGAGTCGAAAGCGGAAATTATTTCCAGCCC
AAGGCTGATCACCACCAACAAACAGCCGGCTTACATTGAACAGGGGACGGAAATCCCTTATCTCGAATCGTCCTCCAGTG
GCGCAACCAGCGTGGCATTTAAAAAAGCGGTCCTCAGCCTCAAAGTGACCCCGCAAATCACGCCTGACAACCGTTTGGTG
CTCGATTTGAGCGTGACCCAAGACCGACCGGGTGAAGTGGTGAAAACGGGCACGGGCGAAGCGGTGGCGATTAACACGCA
GCGTATTGGGACCCAAGTGTTAGTTAATAACGGTGAAACCGTGGTGCTGGGCGGCATTTTTCAACACAGCGTGACCAGTT
CTGTGGACAAGGTGCCCTTGCTTGGGGACTTGCCATTACTGGGCGCGCTGTTCCGTCGCAGCTACGAACAGATGGGGAAA
AGTGAGCTACTGATCTTCGTCACGCCGAAAGTTGTGATTCAGTAA

Domains

Predicted by InterproScan.

• Bacterial type II/III secretion system short domain (Secretin_N) (253-318)

• Secretin and TonB N terminus short domain (STN) (179-227)

• Bacterial type II and III secretion system protein (Secretin) (414-572)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilQ	Vibrio cholerae O1 biovar El Tor strain E7946	80.729	100	0.81
pilQ	Vibrio cholerae strain A1552	80.729	100	0.81
pilQ	Vibrio campbellii strain DS40M4	77.413	95.645	0.74
pilQ	Pseudomonas aeruginosa PAK	39.86	99.652	0.397
pilQ	Legionella pneumophila strain ERS1305867	41.575	95.122	0.395
pilQ	Legionella pneumophila strain Lp02	41.575	95.122	0.395
comQ	Acinetobacter baylyi ADP1	38.737	100	0.395
pilQ	Acinetobacter baumannii D1279779	37.113	100	0.376
pilQ	Acinetobacter baumannii strain A118	37.113	100	0.376