Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | GPY43_RS10515 | Genome accession | NZ_CP046797 |
| Coordinates | 2269714..2270304 (-) | Length | 196 a.a. |
| NCBI ID | WP_055465836.1 | Uniprot ID | A0A0Q2MFM7 |
| Organism | Vibrio furnissii strain 2013V-1001 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2264714..2275304
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY43_RS10495 | aroB | 2265644..2266729 (-) | 1086 | WP_004728570.1 | 3-dehydroquinate synthase | - |
| GPY43_RS10500 | aroK | 2266757..2267275 (-) | 519 | WP_004728569.1 | shikimate kinase AroK | - |
| GPY43_RS10505 | pilQ | 2267463..2269187 (-) | 1725 | WP_041942471.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| GPY43_RS10510 | pilP | 2269212..2269724 (-) | 513 | WP_154180461.1 | pilus assembly protein PilP | Machinery gene |
| GPY43_RS10515 | pilO | 2269714..2270304 (-) | 591 | WP_055465836.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| GPY43_RS10520 | pilN | 2270297..2270887 (-) | 591 | WP_055465837.1 | PilN domain-containing protein | Machinery gene |
| GPY43_RS10525 | pilM | 2270877..2271881 (-) | 1005 | WP_158107812.1 | type IV pilus assembly protein PilM | Machinery gene |
| GPY43_RS10530 | - | 2272026..2274506 (+) | 2481 | WP_158107813.1 | PBP1A family penicillin-binding protein | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 22743.97 Da Isoelectric Point: 5.0631
>NTDB_id=407955 GPY43_RS10515 WP_055465836.1 2269714..2270304(-) (pilO) [Vibrio furnissii strain 2013V-1001]
MANVHDLELDEINEWPLVAQLVALVLLVLVLQGAGYWFYLQPKQDTLAAHKQQEQTLKSTIRIKASKVATLPKLKIQLDE
LAQRYDFLLRQLPVQKELASMLASVNELGLDNSLTFTRIDWGEKQNQQFLYRLPLNIELTGNYHDIGDFSEAIARLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKPEVSDEQ
MANVHDLELDEINEWPLVAQLVALVLLVLVLQGAGYWFYLQPKQDTLAAHKQQEQTLKSTIRIKASKVATLPKLKIQLDE
LAQRYDFLLRQLPVQKELASMLASVNELGLDNSLTFTRIDWGEKQNQQFLYRLPLNIELTGNYHDIGDFSEAIARLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKPEVSDEQ
Nucleotide
Download Length: 591 bp
>NTDB_id=407955 GPY43_RS10515 WP_055465836.1 2269714..2270304(-) (pilO) [Vibrio furnissii strain 2013V-1001]
ATGGCTAACGTACACGATCTGGAACTGGACGAAATCAACGAATGGCCGTTGGTGGCTCAATTGGTCGCCTTGGTGCTGCT
GGTGTTGGTGTTGCAGGGCGCGGGATACTGGTTCTATTTGCAGCCTAAACAAGACACATTGGCCGCACACAAGCAGCAAG
AGCAAACGCTGAAGTCGACGATTCGCATCAAAGCCAGCAAAGTCGCGACATTGCCGAAGCTCAAGATTCAGCTGGATGAA
CTGGCACAGCGGTACGACTTCCTGTTGCGTCAGCTGCCGGTGCAAAAAGAGCTCGCCAGCATGTTGGCGTCGGTGAACGA
GTTGGGGCTCGACAACAGCCTGACCTTTACTCGCATCGACTGGGGAGAAAAGCAGAATCAGCAATTTCTCTATCGGCTGC
CGCTCAATATCGAATTGACCGGTAATTATCACGACATCGGCGATTTTTCTGAAGCGATCGCGCGTCTGCCGCGCATCATT
AATTTTGACGACGTTGACTGGCAGCGCGTCAGCCAAGAGAGCAGCACGCTCCATTTCCGCGTTCGCGCCTATACCTATCA
GTTCAAACCGGAGGTCAGTGATGAACAGTAA
ATGGCTAACGTACACGATCTGGAACTGGACGAAATCAACGAATGGCCGTTGGTGGCTCAATTGGTCGCCTTGGTGCTGCT
GGTGTTGGTGTTGCAGGGCGCGGGATACTGGTTCTATTTGCAGCCTAAACAAGACACATTGGCCGCACACAAGCAGCAAG
AGCAAACGCTGAAGTCGACGATTCGCATCAAAGCCAGCAAAGTCGCGACATTGCCGAAGCTCAAGATTCAGCTGGATGAA
CTGGCACAGCGGTACGACTTCCTGTTGCGTCAGCTGCCGGTGCAAAAAGAGCTCGCCAGCATGTTGGCGTCGGTGAACGA
GTTGGGGCTCGACAACAGCCTGACCTTTACTCGCATCGACTGGGGAGAAAAGCAGAATCAGCAATTTCTCTATCGGCTGC
CGCTCAATATCGAATTGACCGGTAATTATCACGACATCGGCGATTTTTCTGAAGCGATCGCGCGTCTGCCGCGCATCATT
AATTTTGACGACGTTGACTGGCAGCGCGTCAGCCAAGAGAGCAGCACGCTCCATTTCCGCGTTCGCGCCTATACCTATCA
GTTCAAACCGGAGGTCAGTGATGAACAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio cholerae strain A1552 |
77.551 |
100 |
0.776 |
| pilO | Vibrio campbellii strain DS40M4 |
70.526 |
96.939 |
0.684 |