Detailed information
Bioinformatically predicted
Overview
| Name | pilB | Type | Machinery gene |
| Locus tag | GPY30_RS13715 | Genome accession | NZ_CP046791 |
| Coordinates | 2795281..2796969 (+) | Length | 562 a.a. |
| NCBI ID | WP_158134405.1 | Uniprot ID | - |
| Organism | Vibrio navarrensis strain 2462-79 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2790281..2801969
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY30_RS13695 | pdhR | 2791898..2792668 (-) | 771 | WP_039430445.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| GPY30_RS13700 | ampD | 2793078..2793641 (-) | 564 | WP_158134401.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| GPY30_RS13705 | nadC | 2793734..2794621 (+) | 888 | WP_061900612.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| GPY30_RS13710 | - | 2794837..2795277 (+) | 441 | WP_158134403.1 | pilin | - |
| GPY30_RS13715 | pilB | 2795281..2796969 (+) | 1689 | WP_158134405.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GPY30_RS13720 | pilC | 2796992..2798218 (+) | 1227 | WP_158134408.1 | type II secretion system F family protein | Machinery gene |
| GPY30_RS13725 | pilD | 2798358..2799227 (+) | 870 | WP_158135129.1 | A24 family peptidase | Machinery gene |
| GPY30_RS13730 | coaE | 2799229..2799837 (+) | 609 | WP_158134410.1 | dephospho-CoA kinase | - |
| GPY30_RS13735 | zapD | 2799870..2800610 (+) | 741 | WP_039430452.1 | cell division protein ZapD | - |
| GPY30_RS13740 | yacG | 2800695..2800889 (+) | 195 | WP_158134412.1 | DNA gyrase inhibitor YacG | - |
| GPY30_RS13745 | rplS | 2801176..2801529 (-) | 354 | WP_039430454.1 | 50S ribosomal protein L19 | - |
Sequence
Protein
Download Length: 562 a.a. Molecular weight: 62221.32 Da Isoelectric Point: 6.1509
>NTDB_id=407831 GPY30_RS13715 WP_158134405.1 2795281..2796969(+) (pilB) [Vibrio navarrensis strain 2462-79]
MAGNLCYVLRQASLLSPTQEQACLEHLNASGASAPEVLLQLGFFQAEELTEHLSALFDLPPVELSHYDYQSVCNQLGLRE
LITRHQALPLQKNRSALILASADPTNLQAEDDFRFATGLQVEMVLADVKQLQGVIRRLYGRTLSQDNRSGLKEIHQDELA
NLVDVAADEVDNIEDLSQDSSPVSRFINQILLDAVRKGASDIHFEPYEAMYRVRLRCDGILVEVQQPPSHLSRRLSARLK
ILAKLDIAERRLPQDGRIKLKLNQSTAIDMRVSTLPTLFGEKIVLRLLDSSSSNLDIDKLGYSETQKQLYLNALRKPQGM
ILMTGPTGSGKTVSLYTGLNLLNRPEVNISTAEDPVEINLPGINQVQVQPKIGFGFAQALRSFLRQDPDIVMVGEIRDLE
TAEIAIKAAQTGHLVLSTLHTNSAAETIVRLSNMGIASFNLASSLSLIIAQRLARRLCRHCKQPQHLSPTLQELGLSQQD
GLYRANPQGCNECNQGYSGRVGIYEVMPFDDAMAEALIKGASVQSLEMLARKNGMLTLRESGLEKVKQGITSIEELQRVL
YL
MAGNLCYVLRQASLLSPTQEQACLEHLNASGASAPEVLLQLGFFQAEELTEHLSALFDLPPVELSHYDYQSVCNQLGLRE
LITRHQALPLQKNRSALILASADPTNLQAEDDFRFATGLQVEMVLADVKQLQGVIRRLYGRTLSQDNRSGLKEIHQDELA
NLVDVAADEVDNIEDLSQDSSPVSRFINQILLDAVRKGASDIHFEPYEAMYRVRLRCDGILVEVQQPPSHLSRRLSARLK
ILAKLDIAERRLPQDGRIKLKLNQSTAIDMRVSTLPTLFGEKIVLRLLDSSSSNLDIDKLGYSETQKQLYLNALRKPQGM
ILMTGPTGSGKTVSLYTGLNLLNRPEVNISTAEDPVEINLPGINQVQVQPKIGFGFAQALRSFLRQDPDIVMVGEIRDLE
TAEIAIKAAQTGHLVLSTLHTNSAAETIVRLSNMGIASFNLASSLSLIIAQRLARRLCRHCKQPQHLSPTLQELGLSQQD
GLYRANPQGCNECNQGYSGRVGIYEVMPFDDAMAEALIKGASVQSLEMLARKNGMLTLRESGLEKVKQGITSIEELQRVL
YL
Nucleotide
Download Length: 1689 bp
>NTDB_id=407831 GPY30_RS13715 WP_158134405.1 2795281..2796969(+) (pilB) [Vibrio navarrensis strain 2462-79]
GTGGCTGGAAATCTTTGTTACGTTCTGCGCCAAGCTAGTCTACTTAGCCCAACGCAGGAGCAAGCTTGTTTGGAACATCT
CAACGCTTCCGGTGCCAGTGCACCGGAGGTGTTGTTGCAACTGGGCTTTTTCCAAGCCGAAGAACTGACTGAACATCTCA
GCGCGCTGTTTGATTTGCCGCCCGTCGAGCTTAGCCACTATGACTACCAAAGCGTGTGCAACCAACTGGGTTTACGTGAG
CTGATTACCCGCCACCAAGCCCTGCCGCTACAAAAAAATCGCTCAGCGCTGATTCTCGCCAGTGCCGACCCAACCAATTT
ACAGGCCGAAGATGACTTTCGCTTTGCCACAGGGCTGCAAGTGGAAATGGTGTTGGCCGATGTTAAGCAGTTGCAAGGGG
TAATACGTCGCCTATATGGCCGCACCCTTTCTCAAGATAACCGCTCAGGACTGAAAGAGATCCACCAAGATGAGCTGGCC
AACTTAGTCGATGTGGCGGCCGATGAAGTCGACAATATTGAAGATCTCAGCCAAGACAGCTCCCCCGTCAGCCGTTTTAT
CAACCAGATCTTACTCGATGCGGTGCGTAAAGGCGCATCCGATATTCACTTTGAACCCTATGAAGCGATGTATCGCGTGC
GTTTGCGCTGCGATGGTATTTTGGTCGAAGTGCAGCAGCCACCGAGCCATTTGAGCCGTCGACTCTCTGCACGGCTTAAG
ATTCTCGCTAAGCTGGATATTGCCGAGCGGCGTCTACCGCAAGATGGTCGCATAAAACTCAAGCTGAACCAAAGCACCGC
GATTGATATGCGCGTTTCTACCCTACCGACGCTGTTTGGCGAAAAAATCGTGTTGCGTCTGCTCGACAGTTCCAGCAGCA
ACTTAGACATTGATAAACTCGGCTACAGCGAAACGCAAAAGCAGCTCTATCTCAACGCGCTGCGCAAACCGCAAGGGATG
ATCTTGATGACGGGCCCAACCGGCAGTGGCAAAACCGTTTCACTCTACACAGGTTTAAACCTACTCAATCGCCCTGAGGT
CAACATCTCTACCGCCGAAGATCCGGTAGAGATTAACTTGCCCGGCATTAACCAAGTGCAAGTGCAGCCAAAAATCGGCT
TTGGCTTTGCGCAGGCACTGCGCTCATTTTTACGTCAAGACCCCGATATTGTCATGGTCGGTGAAATTCGCGATTTGGAA
ACCGCCGAAATAGCCATTAAAGCCGCGCAAACGGGGCATTTGGTGCTATCCACCCTACATACCAACTCGGCCGCAGAGAC
CATAGTACGCCTATCGAACATGGGCATTGCCAGCTTCAACCTCGCTTCTTCATTGAGCTTAATTATCGCTCAGCGCCTAG
CCCGTCGTTTGTGTCGCCATTGCAAGCAGCCACAACACCTTTCACCAACATTACAAGAGCTAGGGCTAAGCCAGCAGGAT
GGGTTGTATCGAGCCAATCCTCAAGGGTGTAACGAATGTAATCAAGGGTATTCAGGGCGCGTCGGCATCTACGAAGTGAT
GCCCTTTGACGATGCCATGGCCGAGGCACTAATTAAAGGAGCCTCAGTACAAAGCTTGGAAATGCTCGCCAGAAAAAATG
GCATGCTGACGCTTCGAGAATCTGGGCTAGAAAAGGTCAAGCAAGGCATCACCAGCATTGAAGAGCTGCAACGCGTGCTC
TACCTGTAA
GTGGCTGGAAATCTTTGTTACGTTCTGCGCCAAGCTAGTCTACTTAGCCCAACGCAGGAGCAAGCTTGTTTGGAACATCT
CAACGCTTCCGGTGCCAGTGCACCGGAGGTGTTGTTGCAACTGGGCTTTTTCCAAGCCGAAGAACTGACTGAACATCTCA
GCGCGCTGTTTGATTTGCCGCCCGTCGAGCTTAGCCACTATGACTACCAAAGCGTGTGCAACCAACTGGGTTTACGTGAG
CTGATTACCCGCCACCAAGCCCTGCCGCTACAAAAAAATCGCTCAGCGCTGATTCTCGCCAGTGCCGACCCAACCAATTT
ACAGGCCGAAGATGACTTTCGCTTTGCCACAGGGCTGCAAGTGGAAATGGTGTTGGCCGATGTTAAGCAGTTGCAAGGGG
TAATACGTCGCCTATATGGCCGCACCCTTTCTCAAGATAACCGCTCAGGACTGAAAGAGATCCACCAAGATGAGCTGGCC
AACTTAGTCGATGTGGCGGCCGATGAAGTCGACAATATTGAAGATCTCAGCCAAGACAGCTCCCCCGTCAGCCGTTTTAT
CAACCAGATCTTACTCGATGCGGTGCGTAAAGGCGCATCCGATATTCACTTTGAACCCTATGAAGCGATGTATCGCGTGC
GTTTGCGCTGCGATGGTATTTTGGTCGAAGTGCAGCAGCCACCGAGCCATTTGAGCCGTCGACTCTCTGCACGGCTTAAG
ATTCTCGCTAAGCTGGATATTGCCGAGCGGCGTCTACCGCAAGATGGTCGCATAAAACTCAAGCTGAACCAAAGCACCGC
GATTGATATGCGCGTTTCTACCCTACCGACGCTGTTTGGCGAAAAAATCGTGTTGCGTCTGCTCGACAGTTCCAGCAGCA
ACTTAGACATTGATAAACTCGGCTACAGCGAAACGCAAAAGCAGCTCTATCTCAACGCGCTGCGCAAACCGCAAGGGATG
ATCTTGATGACGGGCCCAACCGGCAGTGGCAAAACCGTTTCACTCTACACAGGTTTAAACCTACTCAATCGCCCTGAGGT
CAACATCTCTACCGCCGAAGATCCGGTAGAGATTAACTTGCCCGGCATTAACCAAGTGCAAGTGCAGCCAAAAATCGGCT
TTGGCTTTGCGCAGGCACTGCGCTCATTTTTACGTCAAGACCCCGATATTGTCATGGTCGGTGAAATTCGCGATTTGGAA
ACCGCCGAAATAGCCATTAAAGCCGCGCAAACGGGGCATTTGGTGCTATCCACCCTACATACCAACTCGGCCGCAGAGAC
CATAGTACGCCTATCGAACATGGGCATTGCCAGCTTCAACCTCGCTTCTTCATTGAGCTTAATTATCGCTCAGCGCCTAG
CCCGTCGTTTGTGTCGCCATTGCAAGCAGCCACAACACCTTTCACCAACATTACAAGAGCTAGGGCTAAGCCAGCAGGAT
GGGTTGTATCGAGCCAATCCTCAAGGGTGTAACGAATGTAATCAAGGGTATTCAGGGCGCGTCGGCATCTACGAAGTGAT
GCCCTTTGACGATGCCATGGCCGAGGCACTAATTAAAGGAGCCTCAGTACAAAGCTTGGAAATGCTCGCCAGAAAAAATG
GCATGCTGACGCTTCGAGAATCTGGGCTAGAAAAGGTCAAGCAAGGCATCACCAGCATTGAAGAGCTGCAACGCGTGCTC
TACCTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
77.58 |
100 |
0.776 |
| pilB | Vibrio campbellii strain DS40M4 |
76.335 |
100 |
0.763 |
| pilB | Vibrio cholerae strain A1552 |
72.291 |
100 |
0.724 |
| pilB | Acinetobacter baumannii D1279779 |
52.907 |
91.815 |
0.486 |
| pilB | Legionella pneumophila strain ERS1305867 |
51.233 |
93.772 |
0.48 |
| pilB | Acinetobacter baylyi ADP1 |
50.775 |
91.815 |
0.466 |
| pilF | Neisseria gonorrhoeae MS11 |
46.098 |
98.043 |
0.452 |
| pilF | Thermus thermophilus HB27 |
38.272 |
100 |
0.386 |
| pilB | Haemophilus influenzae 86-028NP |
42.623 |
86.833 |
0.37 |
| pilB | Haemophilus influenzae Rd KW20 |
42.975 |
86.121 |
0.37 |
| pilB | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
36.984 |
99.11 |
0.367 |
| pilB/pilB1 | Synechocystis sp. PCC 6803 |
39.615 |
92.527 |
0.367 |