Detailed information NTG0407833

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GPY30_RS13725
• Genome accession: NZ_CP046791
• Coordinates: 2798358..2799227 (+)
• Length: 289 a.a.
• NCBI ID: WP_158135129.1
• Uniprot ID: -
• Organism: Vibrio navarrensis strain 2462-79
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2793358..2804227

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY30_RS13705	nadC	2793734..2794621 (+)	888	WP_061900612.1	carboxylating nicotinate-nucleotide diphosphorylase	-
GPY30_RS13710	-	2794837..2795277 (+)	441	WP_158134403.1	pilin	-
GPY30_RS13715	pilB	2795281..2796969 (+)	1689	WP_158134405.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GPY30_RS13720	pilC	2796992..2798218 (+)	1227	WP_158134408.1	type II secretion system F family protein	Machinery gene
GPY30_RS13725	pilD	2798358..2799227 (+)	870	WP_158135129.1	A24 family peptidase	Machinery gene
GPY30_RS13730	coaE	2799229..2799837 (+)	609	WP_158134410.1	dephospho-CoA kinase	-
GPY30_RS13735	zapD	2799870..2800610 (+)	741	WP_039430452.1	cell division protein ZapD	-
GPY30_RS13740	yacG	2800695..2800889 (+)	195	WP_158134412.1	DNA gyrase inhibitor YacG	-
GPY30_RS13745	rplS	2801176..2801529 (-)	354	WP_039430454.1	50S ribosomal protein L19	-
GPY30_RS13750	trmD	2801572..2802321 (-)	750	WP_039437921.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
GPY30_RS13755	rimM	2802349..2802897 (-)	549	WP_045571212.1	ribosome maturation factor RimM	-
GPY30_RS13760	rpsP	2802912..2803160 (-)	249	WP_011079541.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32331.56 Da
• Isoelectric Point: 7.8837

>NTDB_id=407833 GPY30_RS13725 WP_158135129.1 2798358..2799227(+) (pilD) [Vibrio navarrensis strain 2462-79]
MDALHYYPWLYVGLAALFGLIVGSFLNVVIYRLPKMMELEWQRECAEAFPQYAIPAPKETLTLSTPRSTCPTCHTPIRIR
DNIPLLSWFLLKGRCHQCQSKISGRYPAVELLSATLCALVAWKFGYSLYSLALLFFTFTLIAATFIDLDTMLLPDQLTLP
LTWSGIALALLEISPVSLQNSVIGAMAGYLCLWSVYHLFRLMTGKEGMGYGDFKLLAALGAWLGWQSLLMIILLSSVVGL
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVALMWGESLMSWYFSVMMGA

Nucleotide

• Length: 870 bp

>NTDB_id=407833 GPY30_RS13725 WP_158135129.1 2798358..2799227(+) (pilD) [Vibrio navarrensis strain 2462-79]
ATGGATGCATTGCACTACTATCCTTGGCTGTATGTTGGCCTAGCGGCGTTATTTGGCTTGATTGTCGGTAGCTTTCTCAA
CGTGGTTATCTATCGCTTGCCGAAAATGATGGAACTGGAGTGGCAACGGGAATGTGCCGAGGCCTTTCCTCAATACGCCA
TCCCTGCGCCGAAGGAAACTCTCACTCTTAGCACGCCGCGTTCCACTTGCCCAACGTGCCATACGCCGATTCGTATCCGC
GATAACATTCCGCTGCTGAGTTGGTTTTTGCTCAAAGGGCGCTGTCATCAGTGTCAAAGCAAGATCAGTGGCCGCTATCC
AGCAGTTGAGCTGCTCAGCGCAACCCTATGCGCCTTGGTAGCGTGGAAATTTGGCTACAGCCTTTACTCGCTGGCACTGC
TGTTTTTCACCTTTACCTTGATCGCTGCGACCTTTATCGATCTCGATACCATGCTTTTGCCAGATCAACTGACCCTGCCT
TTAACTTGGTCCGGTATTGCCCTTGCGCTGCTGGAAATCAGCCCTGTCTCATTGCAAAACTCGGTGATTGGCGCCATGGC
AGGCTACCTCTGCCTTTGGTCTGTCTATCACCTTTTCCGTCTGATGACAGGCAAAGAAGGCATGGGGTATGGTGATTTTA
AGTTATTGGCAGCGCTCGGTGCTTGGCTAGGCTGGCAATCACTTCTGATGATCATTTTGCTCTCTTCGGTGGTTGGGCTA
ATCTTTGGCCTGATCCAACTTCGCTTACAAAAACAGGGCATCGAAAAAGCGTTTCCTTTTGGCCCCTATCTCGCCATCGC
CGGCTGGGTCGCATTGATGTGGGGCGAGTCGTTAATGAGTTGGTATTTCAGCGTAATGATGGGGGCGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	74.74	100	0.747
pilD	Vibrio cholerae strain A1552	68.056	99.654	0.678
pilD	Acinetobacter nosocomialis M2	52.015	94.464	0.491
pilD	Acinetobacter baumannii D1279779	50.909	95.156	0.484
pilD	Neisseria gonorrhoeae MS11	46.377	95.502	0.443