Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GPY30_RS13720 Genome accession   NZ_CP046791
Coordinates   2796992..2798218 (+) Length   408 a.a.
NCBI ID   WP_158134408.1    Uniprot ID   -
Organism   Vibrio navarrensis strain 2462-79     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2791992..2803218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY30_RS13700 ampD 2793078..2793641 (-) 564 WP_158134401.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  GPY30_RS13705 nadC 2793734..2794621 (+) 888 WP_061900612.1 carboxylating nicotinate-nucleotide diphosphorylase -
  GPY30_RS13710 - 2794837..2795277 (+) 441 WP_158134403.1 pilin -
  GPY30_RS13715 pilB 2795281..2796969 (+) 1689 WP_158134405.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GPY30_RS13720 pilC 2796992..2798218 (+) 1227 WP_158134408.1 type II secretion system F family protein Machinery gene
  GPY30_RS13725 pilD 2798358..2799227 (+) 870 WP_158135129.1 A24 family peptidase Machinery gene
  GPY30_RS13730 coaE 2799229..2799837 (+) 609 WP_158134410.1 dephospho-CoA kinase -
  GPY30_RS13735 zapD 2799870..2800610 (+) 741 WP_039430452.1 cell division protein ZapD -
  GPY30_RS13740 yacG 2800695..2800889 (+) 195 WP_158134412.1 DNA gyrase inhibitor YacG -
  GPY30_RS13745 rplS 2801176..2801529 (-) 354 WP_039430454.1 50S ribosomal protein L19 -
  GPY30_RS13750 trmD 2801572..2802321 (-) 750 WP_039437921.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  GPY30_RS13755 rimM 2802349..2802897 (-) 549 WP_045571212.1 ribosome maturation factor RimM -
  GPY30_RS13760 rpsP 2802912..2803160 (-) 249 WP_011079541.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45272.38 Da        Isoelectric Point: 10.3476

>NTDB_id=407832 GPY30_RS13720 WP_158134408.1 2796992..2798218(+) (pilC) [Vibrio navarrensis strain 2462-79]
MKVNAPVQIKNYRWKGINSSGKKVSGDVLAISEIEVRDKLHAQHIKIRKIKKSSVSILTRISHRVKSRDITLFTRQISTM
LATGVPILQALKLVADNHRKAEMKSILTNVSKAIEAGTPMSKALRTASHHFDGLYTDLVATGEQSGNLALVFERLALYRE
KSEELRSKVIKALIYPCMVVLVALGVSYLMLTQVIPEFRKMFVGFGAELPWFTQKVLDLSDFVQAYGSGFFIALISAIYL
MRSISRKSDQIKLKFSRLSLRLPVLGSVFSKAAIAKFSRTLATSFSSGIPILTSLQTTSKTSGNLHYQYAIESVYRDTAA
GMPMYIAMRNSNAFPELVLQMVMIGEESGRLDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFLGVVVGGLVAAMYLPI
FNLMSVMG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=407832 GPY30_RS13720 WP_158134408.1 2796992..2798218(+) (pilC) [Vibrio navarrensis strain 2462-79]
ATGAAGGTAAACGCGCCTGTGCAGATTAAAAATTACCGTTGGAAGGGCATCAATAGCTCAGGCAAAAAAGTGTCGGGTGA
TGTGTTAGCCATTAGTGAAATCGAAGTGCGTGACAAGCTGCATGCGCAGCACATTAAGATCCGCAAGATAAAAAAGTCCA
GCGTCTCAATACTGACCCGCATCAGTCACCGAGTCAAAAGCCGCGACATCACTCTCTTCACCCGCCAAATATCGACCATG
CTCGCCACGGGAGTTCCTATCCTACAAGCGCTAAAACTGGTCGCCGATAACCATCGCAAAGCGGAGATGAAGTCCATTTT
AACCAACGTGAGTAAAGCGATTGAAGCAGGCACACCAATGTCCAAAGCCTTACGAACCGCCAGCCATCACTTTGATGGGC
TGTACACGGATTTGGTCGCGACGGGCGAGCAGTCAGGCAACCTTGCACTGGTATTCGAACGCTTGGCGCTCTATCGAGAA
AAAAGCGAAGAGCTGCGTTCCAAAGTGATCAAAGCATTGATTTATCCTTGCATGGTGGTGCTCGTCGCCTTGGGCGTCTC
TTATCTGATGCTAACGCAAGTGATTCCCGAGTTTCGCAAAATGTTTGTCGGCTTTGGTGCCGAGCTGCCTTGGTTTACGC
AAAAGGTGCTCGATTTATCGGACTTTGTCCAAGCTTACGGTAGCGGTTTTTTTATCGCCCTTATCAGCGCCATTTACCTG
ATGCGCAGCATCAGTCGCAAGTCCGATCAGATTAAACTGAAGTTTTCCCGCCTCAGCTTGAGGCTCCCGGTACTCGGTAG
CGTATTTTCCAAAGCGGCGATTGCCAAGTTCAGCCGTACATTAGCCACCAGTTTTAGCTCGGGCATCCCGATTCTAACCA
GCTTACAAACCACCAGCAAAACGTCAGGCAATCTGCACTATCAATACGCGATTGAAAGTGTTTATCGCGACACCGCCGCA
GGAATGCCGATGTACATTGCGATGCGCAACAGCAACGCGTTTCCCGAACTGGTGCTACAAATGGTGATGATCGGCGAAGA
GTCGGGGCGTCTCGACGATATGCTCAATAAAATCGCGACCATCTATGAGTTTGAGGTGGACAACACCGTAGACAACCTCG
GTAAGATCCTTGAGCCGCTGATCATCGTTTTTCTCGGCGTGGTCGTCGGTGGTTTGGTCGCCGCCATGTACCTACCAATA
TTTAACTTAATGAGTGTTATGGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(73-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

76.225

100

0.762
  pilC Vibrio cholerae strain A1552

75

100

0.75
  pilG Neisseria gonorrhoeae MS11

40.796

98.529

0.402
  pilC Acinetobacter baumannii D1279779

39.951

100

0.4
  pilG Neisseria meningitidis 44/76-A

40.547

98.529

0.4
  pilC Legionella pneumophila strain ERS1305867

39.506

99.265

0.392
  pilC Pseudomonas stutzeri DSM 10701

39.651

98.284

0.39
  pilC Acinetobacter baylyi ADP1

39.798

97.304

0.387

Multiple sequence alignment