Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | GPY59_RS13680 | Genome accession | NZ_CP046772 |
| Coordinates | 1122126..1122410 (+) | Length | 94 a.a. |
| NCBI ID | WP_199266757.1 | Uniprot ID | - |
| Organism | Vibrio alginolyticus strain 2014V-1011 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1117126..1127410
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY59_RS13670 | - | 1119537..1119809 (+) | 273 | WP_005382341.1 | HU family DNA-binding protein | - |
| GPY59_RS13675 | ppiD | 1120011..1121870 (+) | 1860 | WP_005382334.1 | peptidylprolyl isomerase | - |
| GPY59_RS13680 | comEA | 1122126..1122410 (+) | 285 | WP_199266757.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| GPY59_RS13685 | rrtA | 1122509..1123060 (-) | 552 | WP_017634781.1 | rhombosortase | - |
| GPY59_RS13690 | - | 1123064..1123678 (+) | 615 | WP_158173742.1 | DTW domain-containing protein | - |
| GPY59_RS13695 | - | 1123685..1125007 (-) | 1323 | WP_158173743.1 | anti-phage deoxyguanosine triphosphatase | - |
| GPY59_RS13700 | yfbR | 1125023..1125607 (-) | 585 | WP_017634778.1 | 5'-deoxynucleotidase | - |
| GPY59_RS13705 | - | 1125698..1126912 (-) | 1215 | WP_005384283.1 | pyridoxal phosphate-dependent aminotransferase | - |
Sequence
Protein
Download Length: 94 a.a. Molecular weight: 10367.05 Da Isoelectric Point: 5.1423
>NTDB_id=407460 GPY59_RS13680 WP_199266757.1 1122126..1122410(+) (comEA) [Vibrio alginolyticus strain 2014V-1011]
MKWILTLCLFVFAPFSMAADSATDKYEGIEITVNINTATAEEIATMLKGIGEKKAQSIVDYREEHGPFKMAADLKSVKGI
GEATVKKNEDRILL
MKWILTLCLFVFAPFSMAADSATDKYEGIEITVNINTATAEEIATMLKGIGEKKAQSIVDYREEHGPFKMAADLKSVKGI
GEATVKKNEDRILL
Nucleotide
Download Length: 285 bp
>NTDB_id=407460 GPY59_RS13680 WP_199266757.1 1122126..1122410(+) (comEA) [Vibrio alginolyticus strain 2014V-1011]
ATGAAATGGATTTTGACATTGTGCTTATTTGTTTTTGCACCTTTTAGCATGGCTGCGGATTCAGCCACTGACAAATATGA
AGGAATTGAAATTACTGTAAATATCAACACGGCCACTGCTGAAGAAATTGCGACCATGTTGAAAGGTATAGGTGAGAAGA
AAGCGCAGAGTATAGTGGACTACCGCGAGGAACATGGCCCTTTTAAAATGGCAGCAGATTTGAAGAGCGTAAAAGGCATA
GGTGAAGCGACAGTTAAGAAAAACGAAGACCGCATTTTACTGTAG
ATGAAATGGATTTTGACATTGTGCTTATTTGTTTTTGCACCTTTTAGCATGGCTGCGGATTCAGCCACTGACAAATATGA
AGGAATTGAAATTACTGTAAATATCAACACGGCCACTGCTGAAGAAATTGCGACCATGTTGAAAGGTATAGGTGAGAAGA
AAGCGCAGAGTATAGTGGACTACCGCGAGGAACATGGCCCTTTTAAAATGGCAGCAGATTTGAAGAGCGTAAAAGGCATA
GGTGAAGCGACAGTTAAGAAAAACGAAGACCGCATTTTACTGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
87.234 |
100 |
0.872 |
| comEA | Vibrio campbellii strain DS40M4 |
74.737 |
100 |
0.755 |
| comEA | Vibrio cholerae C6706 |
60.87 |
97.872 |
0.596 |
| comEA | Vibrio cholerae strain A1552 |
60.87 |
97.872 |
0.596 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
50.617 |
86.17 |
0.436 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
59.677 |
65.957 |
0.394 |
| comEA | Legionella pneumophila str. Paris |
36.842 |
100 |
0.372 |
| comEA | Legionella pneumophila strain ERS1305867 |
36.842 |
100 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
37.778 |
95.745 |
0.362 |
| comE | Neisseria gonorrhoeae MS11 |
37.778 |
95.745 |
0.362 |
| comE | Neisseria gonorrhoeae MS11 |
37.778 |
95.745 |
0.362 |
| comE | Neisseria gonorrhoeae MS11 |
37.778 |
95.745 |
0.362 |
| comEA/celA/cilE | Streptococcus pneumoniae TIGR4 |
38.202 |
94.681 |
0.362 |